| New model in OGS2.0 | DPOGS210555 |
|---|---|
| Genomic Position | scaffold953:- 12300-14337 |
| See gene structure | |
| CDS Length | 954 |
| Paired RNAseq reads | 12060 |
| Single RNAseq reads | 32228 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013448 (1e-111) |
| Best Drosophila hit | BM-40-SPARC (2e-71) |
| Best Human hit | SPARC-like protein 1 precursor (6e-26) |
| Best NR hit (blastp) | sparc [Papilio xuthus] (1e-137) |
| Best NR hit (blastx) | sparc [Papilio xuthus] (7e-151) |
| GeneOntology terms | GO:0005604 basement membrane GO:0005578 proteinaceous extracellular matrix GO:0007155 cell adhesion GO:0007498 mesoderm development GO:0007165 signal transduction GO:0005509 calcium ion binding |
| InterPro families | IPR018247 EF-Hand 1, calcium-binding site IPR001999 Osteonectin-like, conserved site IPR011992 EF-hand-like domain IPR019577 SPARC/Testican, calcium-binding domain |
| Orthology group | MCL12027 |
Nucleotide sequence:
ATGAAGGGACATATCTTGCTGCTGGCCCTGCTGGTCGCAGCAGTTTGTATGACGGAGGCA
AAGGTTCGTCGTCGTCATCGGCGGCTGCGCCCCACAACCACCACGGAGCCCTCAATGTTG
GCTCACGCACGGCTCTTTCCCGGCAGAGAGGACACGGAAGCAGAGCATCTCGAGCTGGGC
ATGGCCGAGAGACTTGACGAGAAGAAATTCCAGGAATCAGAGAGAGCCCGCATCAATGAA
CTCATGAATGAAATCGCTGAGTCGGATCAGAACGGGAATGAAGTTTTCTTAGATGATCCG
TGTCTGAAAGTGCACTGCAGCGCCGGCCGCGTGTGTGAAATCAACGAGCACGGGGACGCC
GTCTGCAACTGTATCAAGGAGTGTCCCTACGAGACGGACTCGCGCCGGAAGGTGTGCACT
CACCACAACGAGACCTGGTCGTCGGACTGTGAGGTGTACCGCCAGCGTTGTCTGTGTCTG
GACAACTCGGAGCTGTGCCGGGGACCGCAGTACCACCACGTTCAGATCGAGTACTACGGA
GCCTGTCGCGAGATGCCCGAGTGCACCGAGAGCGAGATGTCGGACTTCCCGCGTCGGATG
CGCGACTGGCTGTTTAACATCATGAGGGACATGGCGGAGAGACGCGAGCTGTCCCCGCAC
TACCTGAGCATGGAGCGCGAGGCCGAAAGCAACCTAACTCGCCGCTGGACCAACGCCGCC
ATCTGGAAGTGGTGCGACCTGGACGCCCACGACAATGACCGCTTCGTGTCCGTCCATGAG
CTGTTCCCCATCCGCGCGCCGCTCATGGCGCTGGAGCACTGCATCGCGCCCTTCCTCGAC
CGCTGCGACGAGGACGACGACCACCGCATCACGCTGGCCGAGTGGGGCAAGTGTCTACAG
CTGGACGAGTACGAGCTGGAGGACCGCTGCGACGAGCTCACCGACGAGATGTGA
Protein sequence:
MKGHILLLALLVAAVCMTEAKVRRRHRRLRPTTTTEPSMLAHARLFPGREDTEAEHLELG
MAERLDEKKFQESERARINELMNEIAESDQNGNEVFLDDPCLKVHCSAGRVCEINEHGDA
VCNCIKECPYETDSRRKVCTHHNETWSSDCEVYRQRCLCLDNSELCRGPQYHHVQIEYYG
ACREMPECTESEMSDFPRRMRDWLFNIMRDMAERRELSPHYLSMEREAESNLTRRWTNAA
IWKWCDLDAHDNDRFVSVHELFPIRAPLMALEHCIAPFLDRCDEDDDHRITLAEWGKCLQ
LDEYELEDRCDELTDEM