New model in OGS2.0 | DPOGS210557  |
---|---|
Genomic Position | scaffold953:- 273-6458 |
See gene structure | |
CDS Length | 1905 |
Paired RNAseq reads   | 3350 |
Single RNAseq reads   | 9019 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013450 (3e-127) |
Best Drosophila hit   | splicing factor 1 (3e-113) |
Best Human hit | splicing factor 1 isoform 1 (1e-91) |
Best NR hit (blastp)   | PREDICTED: similar to zinc finger protein [Nasonia vitripennis] (2e-160) |
Best NR hit (blastx)   | PREDICTED: similar to Splicing factor 1 CG5836-PA [Apis mellifera] (1e-130) |
GeneOntology terms    | GO:0005634 nucleus GO:0005681 spliceosomal complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0003723 RNA binding GO:0008270 zinc ion binding GO:0071011 precatalytic spliceosome GO:0002121 inter-male aggressive behavior |
InterPro families    | IPR013084 Zinc finger, CCHC retroviral-type IPR004087 K Homology IPR001878 Zinc finger, CCHC-type IPR004088 K Homology, type 1 IPR018111 K Homology, type 1, subgroup |
Orthology group | MCL13981 |
Nucleotide sequence:
ATGAGTTCTCGACATAGAGACAGAAGCCGATCACGGTCTCGTGATCGTGATCGTCTTAAG
GACAGGGATAAGGGACGGGAACGGGACCGGGATAAAGATAGGGAGAGAGAAAGGGACCGG
GACCGTGATAGGGATCGAGAACGCGACAGGGACCGCGATCGAGACCGTGACAGAGACCGA
GAGAGAGATAGAGATCGCGATCGAAACAGGGACCGGGAGAGAGACCGGGATCGAGATAGA
GAGCGTCATCGGTCTAAGAGGGACAAAGATCGTGATAGAAGCCGCAGCCGTGATCGCCAT
AAAGAAAAGAGACGCAGTCGCTCTCGAAGCCGTAGTAGGAGTCGCGGCAGAAAATCAAAA
GACAGGGATGGTACAATAGCTTTACTGGATCAAATGGTGGGCACCACTACCAAGGCGACG
GCTCGCCAGGTGGCCGTTCCCACCTCCATGAACCCAGCAACACAAGCCGCCATACTGGCA
GCAGCAGCCGTGGCTCAGCGGCGGCTGGCGGCGCCCGTGCAGCCCGCGGCGGCGGCGGCG
GCAGCCCTGTCTGCAGCCCTGTCCGCGGCCACCGCCATCCCGCCGCCCACCTCTGTACAG
CAGAAGCTGGAGCTGCTGCAGGCGCGCACTGAGGGACGGTACCGCGACAAGCAACCTCCC
GACCACCATCCGGACGACGACCACGACGACGGACAAGGTCCTCCCGGGGAGACGGCGGCC
GAGCGTCGGGCCCGGCGGCGCCGCACTCGCTGGATGGGCTCCGAGCACGACAAGACCTTC
ATCCCGGGCCTGCCCACCGTGCTGCCCTCCACGCTCACTCGCGAGCAGGAGGAGCAATAT
CTACTTCAGCTGCAGATCGAGGAGGTGAGCCGCAAGCTGCGCTCGGGCGACCTCGGCATC
CCGGCCAGCGTGGACGAGAGGTCGCCCTCGCCCGAGCCGATCTACTCCACGGACGGCAAG
AGGCTGAACACGCGCGAGTACCGCACGAGGCGGAAACTCGAGGAGGAGAGACACCGGCTC
GTCACCCGCATGCATCAGATCAACCCCGAGTTCAAGCCGCCGCCCGACTACAAGCCGCCC
ATCGTCCGTGTGCACGACAAGGTGATGATCCCTCAGGAGGAACACCCCGACATCAACTTC
GTGGGTCTGCTCATCGGCCCGCGAGGCAACACGCTCAAAGCGATGGAGAAGGAGACCGGC
GCCAAGATCATAATAAGAGGAAAGGGCTCCGTGAAGGAGGGAAAAGTCGGCAGGAAGGAC
GGCCAGCCGCTGCCCGGGGAAGACGAGCCTCTGCACGCCTACATCACCGCCACCAACGCC
GACTGCGTCAAGAAGGCCGTCGAGAAGATCAAGGAGGTGATCCGTCAGGGTGTGGAGGTG
CCCGAGGGACAGAACGACCTCCGCCGCATGCAGCTGAGGGAACTGGCGCAACTCAACGGG
ACTCTCAGGGAGAGCGACTCGCCGCGCTGCGCCAACTGCAGCGCCGCCGACCACAAGACG
TGGCTCTGTCCGGACAAGCCGAACGTGACGAACAGTATCGTGTGTTCATCGTGCGGCGGC
GCGGGACACATCGCGCGCGACTGCCGCGCCAAGAGACCGGGACACGCGCCGCCCGCCCTG
CATCACGACAAGGCTAAGATCGACGAGGAGTACATGTCGCTGATGGCGGAGCTGGGGGAG
GCGCCGCCCGGGGTCGGCGGAGTCACCGGCCCGTCCGCCGCGGCCGCTCGACGCACGCAC
GGACCCTTCGCCCCCGCGCCGCCGCCGCGGGCTATCATGCCGGCTCCCGGTATGCTGGCC
GGTGGTCCGTGGCGCGGGTTCGCTCCCCCGCCGCCCTCCCGCCGAGGAGGGGGGCGGCGT
CTGTTCGCTCCGCCGCCGCCGCCCCCGCCGGTCTCCTCCGCATAA
Protein sequence:
MSSRHRDRSRSRSRDRDRLKDRDKGRERDRDKDRERERDRDRDRDRERDRDRDRDRDRDR
ERDRDRDRNRDRERDRDRDRERHRSKRDKDRDRSRSRDRHKEKRRSRSRSRSRSRGRKSK
DRDGTIALLDQMVGTTTKATARQVAVPTSMNPATQAAILAAAAVAQRRLAAPVQPAAAAA
AALSAALSAATAIPPPTSVQQKLELLQARTEGRYRDKQPPDHHPDDDHDDGQGPPGETAA
ERRARRRRTRWMGSEHDKTFIPGLPTVLPSTLTREQEEQYLLQLQIEEVSRKLRSGDLGI
PASVDERSPSPEPIYSTDGKRLNTREYRTRRKLEEERHRLVTRMHQINPEFKPPPDYKPP
IVRVHDKVMIPQEEHPDINFVGLLIGPRGNTLKAMEKETGAKIIIRGKGSVKEGKVGRKD
GQPLPGEDEPLHAYITATNADCVKKAVEKIKEVIRQGVEVPEGQNDLRRMQLRELAQLNG
TLRESDSPRCANCSAADHKTWLCPDKPNVTNSIVCSSCGGAGHIARDCRAKRPGHAPPAL
HHDKAKIDEEYMSLMAELGEAPPGVGGVTGPSAAAARRTHGPFAPAPPPRAIMPAPGMLA
GGPWRGFAPPPPSRRGGGRRLFAPPPPPPPVSSA