| New model in OGS2.0 | DPOGS210542 |
|---|---|
| Genomic Position | scaffold953:+ 25920-28266 |
| See gene structure | |
| CDS Length | 867 |
| Paired RNAseq reads | 9308 |
| Single RNAseq reads | 46172 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013464 (9e-88) |
| Best Drosophila hit | squid, isoform A (3e-71) |
| Best Human hit | heterogeneous nuclear ribonucleoprotein D-like (5e-39) |
| Best NR hit (blastp) | squid protein homologue [Bombyx mori] (5e-102) |
| Best NR hit (blastx) | Bmsqd-2 [Bombyx mori] (2e-89) |
| GeneOntology terms | GO:0005703 polytene chromosome puff GO:0005634 nucleus GO:0005730 nucleolus GO:0007297 ovarian follicle cell migration GO:0008069 dorsal/ventral axis specification, ovarian follicular epithelium GO:0048477 oogenesis GO:0006405 RNA export from nucleus GO:0017148 negative regulation of translation GO:0008298 intracellular mRNA localization GO:0009953 dorsal/ventral pattern formation GO:0003730 mRNA 3'-UTR binding GO:0030529 ribonucleoprotein complex GO:0003729 mRNA binding GO:0000785 chromatin GO:0035062 omega speckle GO:0005737 cytoplasm GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0006406 mRNA export from nucleus GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0019094 pole plasm mRNA localization GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0007314 oocyte anterior/posterior axis specification GO:0016325 oocyte microtubule cytoskeleton organization GO:0007293 germarium-derived egg chamber formation GO:0030720 oocyte localization involved in germarium-derived egg chamber formation GO:0045451 pole plasm oskar mRNA localization GO:0071011 precatalytic spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071013 catalytic step 2 spliceosome GO:0033119 negative regulation of RNA splicing |
| InterPro families | IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain |
| Orthology group | MCL11358 |
Nucleotide sequence:
ATGGCCTCTAACGATAATTTTGCACAAGATGTTACTGAAAACCAAGTGAATGGAAATGGA
GAAAACGGTGGAGGTGATGGTCAAGAACATAACAGCGCCGACGCCCCAGGACGCGATGAC
GACAGAAAACTTTTTGTTGGAGGGCTCAGCTGGGAAACGACAGATAAGGAATTGCGTGAA
CACTTCAGTGCGTATGGAGAAATTGAAAGTATCAATGTCAAGACAGATCCTAATACAGGA
AGATCGCGAGGCTTCGCCTTCATTGTATTCAAAGCCCCCGATTCCATTGACAAAGTGATG
GCTGCTGGAGACCACACAATTAACAATAAAAAAGTAGACCCAAAAAAAGCGAAGGCTAGG
CATGGGAAGATATTTGTTGGAGGTCTTAGTAGTGAAATCTCTGATGATGAAATCAAGAAC
TTCTTCAGCAATTTTGGAAATATTATCGAAGTCGAGATGCCTTTCGATAAAACAAAGAAC
CAGAGGAAAGGTTTCTGTTTCATAACATTTGAATCCGAGCAGGTGGTCAATGAACTCCTC
AAGACACCAAAACAGACCATTGCTGGCAAAGAGGTCGATGTTAAGAGGGCGACGCCTAAA
CCCGACGGCCCTGGAGGCATGGGCGGGCGAGGAGGACGCGGGGGCCGCGGAGCTCGCGGG
GGACGGGGTGGCCGCGGCGGCTACGGCGGTCAGGGCGCCTGGGGCAACCAGGGGTATGGC
GGCTATGGCTACGGTCAGGGAGGATACGGCGGCGGATACGACGGCTACGGGGGCTATGGC
GGATACGGATACGACGGCTACGGGGGCTACGGTGGATACGATTACTCCGGATACCCCAAT
TACGGTAAACGCGGCAAGCAGCACTAG
Protein sequence:
MASNDNFAQDVTENQVNGNGENGGGDGQEHNSADAPGRDDDRKLFVGGLSWETTDKELRE
HFSAYGEIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVMAAGDHTINNKKVDPKKAKAR
HGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELL
KTPKQTIAGKEVDVKRATPKPDGPGGMGGRGGRGGRGARGGRGGRGGYGGQGAWGNQGYG
GYGYGQGGYGGGYDGYGGYGGYGYDGYGGYGGYDYSGYPNYGKRGKQH