New model in OGS2.0 | DPOGS213467  |
---|---|
Genomic Position | scaffold738:- 25141-57161 |
See gene structure | |
CDS Length | 1704 |
Paired RNAseq reads   | 134 |
Single RNAseq reads   | 332 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004491 (2e-43) |
Best Drosophila hit   | AP-2, isoform A (1e-97) |
Best Human hit | transcription factor AP-2-alpha isoform c (7e-84) |
Best NR hit (blastp)   | transcription factor ap-2 [Aedes aegypti] (8e-128) |
Best NR hit (blastx)   | AP-2 [Bombyx mori] (4e-116) |
GeneOntology terms    | GO:0007422 peripheral nervous system development GO:0030902 hindbrain development GO:0030182 neuron differentiation GO:0001501 skeletal system development GO:0030318 melanocyte differentiation GO:0050935 iridophore differentiation GO:0003700 sequence-specific DNA binding transcription factor activity GO:0005634 nucleus GO:0006355 regulation of transcription, DNA-dependent GO:0014036 neural crest cell fate specification GO:0014032 neural crest cell development GO:0051216 cartilage development |
InterPro families    | IPR013854 Transcription factor AP-2, C-terminal IPR004979 Transcription factor AP-2 |
Orthology group | MCL11946 |
Nucleotide sequence:
ATGAACGTTTACATGCAGTGCCATCGTGAGTCTGTAAGTCTCCAAGCGCCCACTCCATGT
GATAGCCTCGAGCGACGCGCGCTCACGTGCTGCGCGGGAGATTTGAATTTGGAACACGAC
AAAGACATCAAACGTAATATAAATATAAGTTTAGAGAAAGACAGCAGCAAAACAATAAGA
TTGGAGCTACGTCACCCGGATCATGTTGTAATGGATTATAAGATTGACGGACAAATGGAC
GTCGCATTGGTTGGAATTAATGAAACTGAAGACAAACACGAGGACACTAACCAAAACGGA
AATGAGGAAAAAAAGAGACGAAAGAGGAAACCTCTCTTCATTCCATGGATTCACCATGCG
GGTGCCGGGTCCAGGTTGAAGGGAGAGAAGCTTCAACAGCCCGGGACTTGCGACCCAGGT
GTAGCTTTAAGGGGCCCCTATGTAATAGTAGGTGGCTTTCACATTTCACAAGTGTTGTAT
TACATTGAAGACATCGAAACAGAGCTGGCGTACGTTGATTTATCTAGCGTGATAGAGATC
CAGGAGCGTCTGGGCGGCGGCGGGCTGGGTTTGGGCGGCGGAGGCTTCCGCGGCGCTCAA
CCCTCGCTCGCCGACTTCCAGCCGCCATACTTCCCGCCGCCCTTCGCCCCTAGCGCACAT
CCTGCGAGTCCGCACCACCAACAACAGAGCCATGGCATGGAGTATTCTGGAGGTCCGGAG
TACGGGCAGCACTACGCGCCGCAGCAGCTCCTACCACGACACCACGGACACGAGCCTCCC
CATCTCAGACATCATAGAGACCATCACGACGTACACTCCCACCACCTACCTCACGGTGGA
TTCAGTTACGACAGGAGGACGGACTACGGAGCCCGGGAGCAACACGACCTCGCCCTTCAT
CACGCGTTACACACGGACGAGACACAGAATGCAGGCATGGACGATACGACGGGCTTCATG
ACCGACCTTCCTTTATTAAAAACAATGAAAGCCCGCGATGTAGGGACAGGTGCCTGCGCC
CCCAGCGACGTGTTCTGCTCTGTACCAGGGAGACTCTCTCTCCTGTCTTCGACCAGCAAG
TACAAGGTCACCGTCGCCGAGGTCCAGCGAAGGCTCTCACCACCAGAGTGCCTGAACGCG
TCACTACTCGGAGGTGTACTGAGAAGAGCAAAAAGCAAAAATGGCGGTAGGTTACTTAGG
GAAAAACTAGAGAAAATCGGTCTGAACCTTCCAGCGGGGCGACGGAAAGCGGCTAACGTG
ACGCTACTCACGTCATTAGTAGAAGCCGAGGCTGTTCATTTGGCGCGTGATTTTGGTTAC
GTCTGCGAGACTGAGTTCCCGGCCCGAGCGCTCGCGGAATACCTCGCGAGACAATACGCT
GAACACGACGCCAGACGACGCAGGGACCTGTTACACGCCACCAAACAGGTGGTGAAGGAG
GTGATGGACCTATTGAACCAGGACCGTTCTCCTCTGTGTAACACGCGACCCCCTCACCTC
TTGGAGCCGGCCATACAGCGGCACCTCACACACTTCTCTCTCATATCACACGGTTTCGGT
GGACCGGCCATCGTCGCCGCACTGACAGCCATACAGAATTTCCTAAACGAGTCGTTAAAG
CATTTAGACAAGTTATATCCACAGAGCGGGATGGTGTCGTCGACAATGGACAAGACAAAA
ATGGATCCCGACATCAAAAAGTAG
Protein sequence:
MNVYMQCHRESVSLQAPTPCDSLERRALTCCAGDLNLEHDKDIKRNINISLEKDSSKTIR
LELRHPDHVVMDYKIDGQMDVALVGINETEDKHEDTNQNGNEEKKRRKRKPLFIPWIHHA
GAGSRLKGEKLQQPGTCDPGVALRGPYVIVGGFHISQVLYYIEDIETELAYVDLSSVIEI
QERLGGGGLGLGGGGFRGAQPSLADFQPPYFPPPFAPSAHPASPHHQQQSHGMEYSGGPE
YGQHYAPQQLLPRHHGHEPPHLRHHRDHHDVHSHHLPHGGFSYDRRTDYGAREQHDLALH
HALHTDETQNAGMDDTTGFMTDLPLLKTMKARDVGTGACAPSDVFCSVPGRLSLLSSTSK
YKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLEKIGLNLPAGRRKAANV
TLLTSLVEAEAVHLARDFGYVCETEFPARALAEYLARQYAEHDARRRRDLLHATKQVVKE
VMDLLNQDRSPLCNTRPPHLLEPAIQRHLTHFSLISHGFGGPAIVAALTAIQNFLNESLK
HLDKLYPQSGMVSSTMDKTKMDPDIKK