New model in OGS2.0 | DPOGS215978  |
---|---|
Genomic Position | scaffold734:+ 81574-84499 |
See gene structure | |
CDS Length | 1275 |
Paired RNAseq reads   | 894 |
Single RNAseq reads   | 2809 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001209 (0.0) |
Best Drosophila hit   | COP9 complex homolog subunit 3 (2e-102) |
Best Human hit | COP9 signalosome complex subunit 3 isoform 1 (2e-130) |
Best NR hit (blastp)   | PREDICTED: similar to COP9 constitutive photomorphogenic homolog subunit 3 [Apis mellifera] (2e-152) |
Best NR hit (blastx)   | PREDICTED: similar to COP9 constitutive photomorphogenic homolog subunit 3 [Apis mellifera] (7e-149) |
GeneOntology terms    | GO:0005737 cytoplasm GO:0008180 signalosome GO:0005634 nucleus |
InterPro families    | IPR011991 Winged helix-turn-helix transcription repressor DNA-binding IPR000717 Proteasome component (PCI) domain |
Orthology group | MCL13349 |
Nucleotide sequence:
ATGGCTTCACCATTAGAACAATTCGTGAATAATGTAAGAATATCATCAGCATCAGGAAAT
TTTCGTGAGCTTTACGAAATGATTGGAAAGTCGGAAGAAGTGTTGCAACGAAACAGTGTA
CATTTAAATACAGTGCTAGAAACCCTTGATATACAACAACATTCACTCGGTATCCTAGCC
GTGTTACTTGCAAAATTTTCATCACCACAGGGTAATGATGTAGACAGATCTACAATGTAC
CAACAAATACATGATTTTATTACCAATTGCAATGGAGAGCAGGTTCGCTTTGGACCAGAT
CTATATGCTGATTTATGCCATCTCTTGACTGACCATCTCATAGAGCAAAAACAACCTATT
CGAGGGATTGAAATACTCAAAAAAGCTATTAGAAAAATACAATTGTTTGACTCGCAGTTA
ACATCTATCCACGCTGACTTGTGTCAGTTATGTTTACTGTCTAAGTGTATGAAGCCGGCA
CTGGAGTTTTTAGATACTGATGTTACTGGAATTGGATCTGAGCTGGGTGGTGTGAATGAT
TCTAAACATTTTTTACTCTACTACTATTATGGAGGAATGATATACACAGCTTTGAAAAAC
TATGACAGAGCCTTATATTTCTTTGAAGTAGTAGTTACTGTCCCATCGATGGTAGTGTCT
CATATAATGCTGGAAGCTTATAAGAAATACATTTTGATTTCATTAATCTTACACGGGAAG
ATATTACCAACACCAAAGTACACATCCCAAGTTGTATTTCGCTTCTTAAAACCATTATCT
CTTGCTTATCTTGAATTGGCAACATCTCAACATGCTGCTTTGAAACACAGGGAAGTCTTT
GTGAGAGACAAGAATATGGGATTAGTTAATCAGGTTTTGAGTTCTATGTACAAGAAGAAC
ATACAGAGACTGACAAAGACATTTTTAACTTTGTCTCTTAGTGACGTCGCATCACGTGTC
CAGTTATCTGGACCTGCACAAGCTGAATCTTATGTACTCAATATGATTGAAGAAGGTGAA
ATCTATGCAATGATCAATCAAAAGGATGGGATGGTTGTATTTCTTGATAGCCCAGAGAAG
TATGCATCTCCGGAAACATTAAGTGTTCTAGAACAACAAATGGCAGCATGCACTAAGTTG
CATCAGTATATTCAAGAAATGGATGAACAGATACAAATGAATCCACAATATGTGAAGAAA
TCAGTTGGAAGTCATGATGAAGATATGCCCGCCACAAGTCAGAAGTCAATAGCCATAAGC
ACTTATTCTATGTAA
Protein sequence:
MASPLEQFVNNVRISSASGNFRELYEMIGKSEEVLQRNSVHLNTVLETLDIQQHSLGILA
VLLAKFSSPQGNDVDRSTMYQQIHDFITNCNGEQVRFGPDLYADLCHLLTDHLIEQKQPI
RGIEILKKAIRKIQLFDSQLTSIHADLCQLCLLSKCMKPALEFLDTDVTGIGSELGGVND
SKHFLLYYYYGGMIYTALKNYDRALYFFEVVVTVPSMVVSHIMLEAYKKYILISLILHGK
ILPTPKYTSQVVFRFLKPLSLAYLELATSQHAALKHREVFVRDKNMGLVNQVLSSMYKKN
IQRLTKTFLTLSLSDVASRVQLSGPAQAESYVLNMIEEGEIYAMINQKDGMVVFLDSPEK
YASPETLSVLEQQMAACTKLHQYIQEMDEQIQMNPQYVKKSVGSHDEDMPATSQKSIAIS
TYSM