| New model in OGS2.0 | DPOGS201359 |
|---|---|
| Genomic Position | scaffold13:- 439316-446794 |
| See gene structure | |
| CDS Length | 4338 |
| Paired RNAseq reads | 1778 |
| Single RNAseq reads | 4643 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002152 (1e-108) |
| Best Drosophila hit | Nup153, isoform B (8e-18) |
| Best Human hit | E3 SUMO-protein ligase RanBP2 (1e-11) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC003451 [Tribolium castaneum] (3e-49) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC003451 [Tribolium castaneum] (4e-60) |
| GeneOntology terms | GO:0005643 nuclear pore GO:0008270 zinc ion binding GO:0006607 NLS-bearing substrate import into nucleus GO:0006999 nuclear pore organization |
| InterPro families | IPR001876 Zinc finger, RanBP2-type |
| Orthology group | MCL17025 |
Nucleotide sequence:
ATGAGTGCCAGCCTTTCATCAAGAAAAGCGAAGAGATCGAGGACGGATAGTGAAGCCAAC
GACTCCTTTGTGAAGAATGTAACATCTCGGATGTCAGGGTTATTACCTGCGACTATTACT
AGATGGTTCAGCTCATCGAGTTCGTCCAATACAAATGGTTCAACTGTGGTAGAATCAACA
GATTCATCGACTGAAGATGAGGCTACAGATGGTCTCAGAACACCAAATCAGAGGAATCAA
CCATCCCAACCTCCAGCTAAAAGAATGAGATATGGTACCCCAGGGACATCAAGTTATTAT
TATCCAGAAACCAAAAGCACAAGTACAAACACTGAAACAACAGAAACATACAGTACTCTG
CAGTCACCTATAAAAGATACTTTAAAAGTAGAAACAAACTATGTTTCAACACCATCATGC
TCTCCAAGTGAAACATCCACTATAAATGAAAATGAAAAGGATCCCTCTATCTACATATAC
CAAGATTCCATAACAAGTGTTAACAATTCAGTTGAGCAAACACGAAAGTCAATTTTTGGC
TCTGAAGAAAGACTTCAAGAGTCCTGTGCTAGAACTGCTGCAAATACATATAAGGATCTC
ACTCAACCTTACTTTAAGCCTGGTCTTCTCTGCACTCCATTTTATACATCAAGACCAGTT
TATGGAGGAACACGTAATGTCTACGTGAACCGGCCAAATATCAAGCATAAAACAAATCCT
TTAGTAAACAAAGTTGACAACAATAGTAGCGTAAATATCAGCAATTCCGCAAAGCGTATT
ATGGATCTATTGGAAAATTATTCATCCCCAGTTAGTGAGGCTAGGAGAATTTCTCGGCTT
GTCAATTCTTCTTGTGATAAAACTCCAGATACATCTCTTAATACTAGTATTGATGCTAAT
AATAGCAAAGCAGCATCTTACAAAAAAAGAGAACTTTATGTGCCAAGTTTTGCTTCAATA
CTACAACTGAAACAAAAGGCTAGACTCAATGAAACAACAAGTGCAGCACGACAAATTATT
GCATCACACAGTAGTTCATTGAACACATTACCTTATCCAGCTAGCACTTCTGGCATTAGT
CAAACCAAGGAACATAGTCAAGAAAATCTTACTACAAAAATGAAGACAAGAGTCACTAGA
CTTAATAGAGGAGAAGATAAAGAAAGTGAGAGTAACAAGCTTCCAATAGTTGAATTACCA
ACGGCTGTACTACAGATAGATAAAGACAATTTACCAAAATTTTCACTTGATACTCCTGTG
TCTCATTCATCAGATAATAAGCAAAAAAATCCAGAATCAGTGTTAACTGGAACAAACTCT
GTTGCTCAAGTTCCAAAAGTTGTACTTTCCAAAAATGAAGCTCCAAAAAGTAGGCTAACT
GATATGCTTGATGGTGAAACATACACATTTTCTAGTCCTATAAGGATATCTGAAGATAAT
TTTATTACTTCTACAGAGACCTACAAGTTTGGGAGTCCTGAGCGGTCTGTAGAACCATCA
AAAAATAACAACAAAATTGTTAGTAGTTCCGACGACATTGAAGAAGATGAAGAGGATATA
GGAATTCAGTCTCATCAGTCAGATGAAATCCTAAAAACGAGTACATCTCAGAGTTGTGTT
TCGCTTGAAGCAGCGAAATCACCAATGGAAAGGCCTATCTTTAATAAATGTTTAGAATGT
AAAGTGGTTGCTAGTCAGCTATCCAGTGACAAATGTTTTGATTGTGAAAAGAAAGTTAAT
AGTACTGGTAAGATGGACTCAAAGTTATCTAAATCTACTAGTTCCACTTGGAAATGTCAA
GATTGCTGGGTAAATAATGATGTTGGAGTAGAGAAATGTGTGTGCTGTGGGGCCAAAAAT
TCAAGTGCTTCGCAAAATTCACCTGCACCCAAAGTAAGTTCCGAAATTCCTAAAACTACT
TGGAAATGTCAAGATTGTTGGGTAAACAATGAAGGAACAGATAAATGTGTATGCTGTGGA
GCCAAACAATCTATTGCACCTAAAATGTTGAGTAAACTTCAACCGCAAAAGCCGGTTAAT
ACTTGGAAATGTGAAGAATGTTGGGTTGATAACAATTATGGAGCTGACAAATGCATTTGT
TGTGGTACAAAAAATTCTAGTACTACTAAAACTGAGCAAAATACTAATTCTGAAACATCA
GATTGGAAATGTGGGGTGTGCTGGCTAAAAAACAAATCTCATGATGATAAGTGTGTGGCT
TGTAGTGGTCCAAAGCCCGCAGCAAAAGAACAAAATCAGAATAAAATTTCATCACCTTCA
CCTAATGCAAATAACAATAATTCACTATTAAAGAATATTGTCAAATCACAAAGTAATAAA
TGGGAATGTCCCAGTTGTTTTGTTCATAATGATAATAACATAAGCAAATGTGTATGTTGC
GAAACGGAAAAACCAGGTATAACAAAGGAATCCGAAAAGAAGAGTTTCAATTTCGGAGTA
TCTCCGAATGTATCCTTTAAATTCGGTATTAATCCTAAACAAACTACTACAGAAAGTGAA
CCTAAACCAGCATCAATATTTGGTCAGGCAACTCAAGAAATGGAAACTAATAACAATCAC
ATTTCAAAAGCTCCTTCGTTTACTTTTGGAATACAGAACAAAAAACCAGAAAAAGAAGTT
TCTAAAGAAGATAACAATATTGTTGAAACACCCAAGGTTGCCTTCACTTTTGGTATTCCA
AAAGACAACTCAACACCAAATGCTGCACCAGCGTTTAAAATTAATACTGATATGTTCAAA
CCAACTACACAATCTTCTGTAACTAATATATCGAGTGCGAATGATTCTGAAAGAGCTCAG
GAAGTCCCAAGCGTGGACCAGTCTCAATTGAGAGGAGTTGAATCTGCTCCAAAGCTTACT
GGGCTATTTGGTGCATCGCCATCTAAAGATTCTACATTAAACAAGTCGATAACCAATGCG
TTGACTCCTTTTAACTCCAATTTTACTGCTGAGAGCTCTGCTAATCCTACATTGACGACG
GCTAGCAATACTTTGGGCACATCAAATGCAAGCTTCAGCATGACAGGAAATCAGCCTTCT
AAAAATTTATTTACTACATCCATTGCGCCCACATCTGCTAACGCTTTTGCGAGCGTGCAA
ACACCGCCAGTAACATCATCTGTGTCAATGTTCCAAAAAAATGAGCAAGCAAGTCCATTG
ATGTCGTTCTTTCAAAAATCTGAAAACACATCACTATCAATGTTTAATAAGAACGAGCCC
ACTGCGACAACAACTTCAGTGTCAGTTCTTCCTAGTGCACCAGTGTTCAGTTTTGGTACG
AGCACACCTACTACAGCCCCGTCGAATGAAAAGTCGGGATTTACTTTTACTTTTGGACGG
GACAGTAAAAATGAGACTCCATCCATGTTTAAATTGCCCTTTGGAGGTACTCCGGACAAT
TCTGCCTCAAATAAGTTTATGATGCCATCATCAAACATCAACTCCAGTAATATGCTGCCT
GCGAGCAATTTGGCTGGAAATTCTGTTGGAAATAACATGCCTCTCATGCTATCAGGAGGT
AATAATAATCCCCTCGGTGGTTTATCTACAGGCAACGGATTACCCTCCGGGAATTTAATG
AATAATCTTACACAAAATCAATTAAGCATGGCGAGTAACGTCATCACAAACAATGCACCA
GCAGCTTCCGGCGATATCTTCAATACTCCTGTGCAGAAAGAGAATATGTGGTCTACAGGA
AATAATAATACTCAGGGCAGCATGTTTGGTTCAAGTGAAGCATCAAATAATTCACAGAAA
CGGCCGTTCGCTTTCGGAGCAAGTTCTGGAACATCGAAGCCATTCAGTCCAGTTGGTAGT
TCGCCGTTTGATAATCCGAATCAGCCTCGACCACTATTCGGTATAACAAATCAACCGGCA
GCGAATCCTTTTGGGTCTGCAGCCAGTCCTATGGCACCAAACATGTTCAGTTCACAACCC
AGTAACCCTGCGCCTTCAGTAGGCATGTTCGGGAATACCAATGCTCCTGGCAGTCAACCT
CCGGCTTTTGGTTTCCCAGTATCATCGTTTTCGTCATTTGATTCGAACAACATGAATCAG
CCAATGAACCCCAATCCGACCCCGGCATTCAATTTCGGTGCTCCGCAACAACCATCTGGC
GTCTTCGGTTTTGGTCAGCAACAGCAACAACAGCCACAGCTACAACAGCAGCAGCAGCAG
CAGCAACAGCAGCCGCCTCAGCAGCAAGGCGTATATAATTTCGGGGGCGGCGCCCCTCAG
GTACAATTTACAGTAGGAAGTGCTCCGAACACGGCCGGAAGACGTGTTCGTAGAGCGTTC
AGACGTACCCAGCGGTAA
Protein sequence:
MSASLSSRKAKRSRTDSEANDSFVKNVTSRMSGLLPATITRWFSSSSSSNTNGSTVVEST
DSSTEDEATDGLRTPNQRNQPSQPPAKRMRYGTPGTSSYYYPETKSTSTNTETTETYSTL
QSPIKDTLKVETNYVSTPSCSPSETSTINENEKDPSIYIYQDSITSVNNSVEQTRKSIFG
SEERLQESCARTAANTYKDLTQPYFKPGLLCTPFYTSRPVYGGTRNVYVNRPNIKHKTNP
LVNKVDNNSSVNISNSAKRIMDLLENYSSPVSEARRISRLVNSSCDKTPDTSLNTSIDAN
NSKAASYKKRELYVPSFASILQLKQKARLNETTSAARQIIASHSSSLNTLPYPASTSGIS
QTKEHSQENLTTKMKTRVTRLNRGEDKESESNKLPIVELPTAVLQIDKDNLPKFSLDTPV
SHSSDNKQKNPESVLTGTNSVAQVPKVVLSKNEAPKSRLTDMLDGETYTFSSPIRISEDN
FITSTETYKFGSPERSVEPSKNNNKIVSSSDDIEEDEEDIGIQSHQSDEILKTSTSQSCV
SLEAAKSPMERPIFNKCLECKVVASQLSSDKCFDCEKKVNSTGKMDSKLSKSTSSTWKCQ
DCWVNNDVGVEKCVCCGAKNSSASQNSPAPKVSSEIPKTTWKCQDCWVNNEGTDKCVCCG
AKQSIAPKMLSKLQPQKPVNTWKCEECWVDNNYGADKCICCGTKNSSTTKTEQNTNSETS
DWKCGVCWLKNKSHDDKCVACSGPKPAAKEQNQNKISSPSPNANNNNSLLKNIVKSQSNK
WECPSCFVHNDNNISKCVCCETEKPGITKESEKKSFNFGVSPNVSFKFGINPKQTTTESE
PKPASIFGQATQEMETNNNHISKAPSFTFGIQNKKPEKEVSKEDNNIVETPKVAFTFGIP
KDNSTPNAAPAFKINTDMFKPTTQSSVTNISSANDSERAQEVPSVDQSQLRGVESAPKLT
GLFGASPSKDSTLNKSITNALTPFNSNFTAESSANPTLTTASNTLGTSNASFSMTGNQPS
KNLFTTSIAPTSANAFASVQTPPVTSSVSMFQKNEQASPLMSFFQKSENTSLSMFNKNEP
TATTTSVSVLPSAPVFSFGTSTPTTAPSNEKSGFTFTFGRDSKNETPSMFKLPFGGTPDN
SASNKFMMPSSNINSSNMLPASNLAGNSVGNNMPLMLSGGNNNPLGGLSTGNGLPSGNLM
NNLTQNQLSMASNVITNNAPAASGDIFNTPVQKENMWSTGNNNTQGSMFGSSEASNNSQK
RPFAFGASSGTSKPFSPVGSSPFDNPNQPRPLFGITNQPAANPFGSAASPMAPNMFSSQP
SNPAPSVGMFGNTNAPGSQPPAFGFPVSSFSSFDSNNMNQPMNPNPTPAFNFGAPQQPSG
VFGFGQQQQQQPQLQQQQQQQQQQPPQQQGVYNFGGGAPQVQFTVGSAPNTAGRRVRRAF
RRTQR