New model in OGS2.0 | DPOGS201378  |
---|---|
Genomic Position | scaffold13:+ 39571-43301 |
See gene structure | |
CDS Length | 1671 |
Paired RNAseq reads   | 522 |
Single RNAseq reads   | 2698 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000691 (3e-27) |
Best Drosophila hit   | pericardin (1e-06) |
Best Human hit | ND |
Best NR hit (blastp)   | PREDICTED: similar to pericardin CG5700-PB [Apis mellifera] (5e-10) |
Best NR hit (blastx)   | hypothetical protein BRAFLDRAFT_253939 [Branchiostoma floridae] (2e-21) |
GeneOntology terms    | GO:0005605 basal lamina GO:0007507 heart development GO:0005578 proteinaceous extracellular matrix GO:0035088 establishment or maintenance of apical/basal cell polarity GO:0016477 cell migration GO:0002009 morphogenesis of an epithelium |
InterPro families   | ND |
Orthology group | ND |
Nucleotide sequence:
ATGCGTCCTGCGCGCGCGTTCAGCCCACCGTGGCTCCTTCAACTTGTATCGCTAACCTTT
ATTACGGTCGCTACCGCTAAATACCAGGGTACATTGATATGTCAGCAACGTAATACACAG
ATTTGTAAGACTTGGTTCGTACAATCAGATGAATTTCAAAACTTTAACGAGGTGGAGACT
CCTACTTCCATCCGAATTCGAGAAAATTGTGGTTTCACTTGGATGCAAGCTTTAACACCT
CAGCAAAAATTTTATAAGGTATTGAGTCTTAGTAAAATAAAATCATGGAAAAGGCTACAC
TGTAAAAGAATAATTATGATCGGTATGTTCTTGGACTGGAAAGAAATAAGCTATGCCTTG
GGTGATACCGTAAGAGTTCGTCGACAAACTTTTGTTCCCAAAGGAAGATATCGTGGACAA
ACACAATCACAATATTTAGCTATTAATGGAGGAAGTGGCAAAGACGAGGGGAAAGCTGAA
GCGCATTCTGCTGCAGACTCATCTAGAGCAAGTGTCAGTGGAAATAGCGGTATGGGACAA
GCTCAAAGTCAATCAATTTACGATCCTAATTGCGAAGATTGCCTTTCTGCAAGAGATGGT
AAAGATGAAGCAGAAAACCTTAAACATCCAGGCATTACCAGACCTGAAAGCAATAGGTTC
GGAATAAGTAATGAATGGCCCGGTGTCAATCAAGGAAATTATATTCCAGGCCAAAATGGT
TACAATCCTATAAGCTCACAAGGTATTACACCCGGTACAGGTGTTTCTCACATGTCTGGT
CCCCAAGGGCCAAGTTATTATGGACCTAGCTCAAGAACTGATGGTTATGGTCCAATAGGA
TCAAGTGAAAAAGGAGGTTATAGTCCAAATGGAAATTATGGATCCCCCGGAGGATACAAT
AAAAATCAATACCAAGGAACACGACCTGGGTATAATTACAATAAACCTGGAAATGAAGTT
GGAAGTAATTACATCCCAGATGGAAATAATGGTTATGTGGACCCAAACGCAAATACAGTT
AACAATATCTATAAGCCTCCTAGGGATTCTAAGGTGCTAGGGACAATACCAGGGCAGAGA
ATAACACCGGGACAAGGAATGGGACCTGGACAGGGAATGATACCTGGACAGGGAATAGGA
CCTGGTCAATTATTGGGACCTGGACAAGGAATGGGACCAGGACAGGGAATAGGACCAGGG
CAGGGATTAGCACCAGGACAGGGAATTGGGCCTGGACAAGACCTGGACAAGGAATGGGAC
CTGGACAAGGTATGGGACCAAGACAAGGAATGGGACCTGGACAAGGTATGGGACCTGGAC
AGGAAATTGGATCAGGGCAAGGAATGGGCCCTGGACAAGGTATGGGACCTGGACAGGGAA
TTGGATCAGGGCAAGGAATGGGCCCTGGACAAGGTATGGGACCTGGACAGGGAATTGGAT
CAGGGCAAGGAATGGGCCCTGGACAAGGTATGGGACCTGGACAGGGAATTGGATCAGGGC
AAGGAATGGGCCCTGGACAAGGTATGGGACCTGGACAGGGAATTGGATCAGGGCAAGGAA
TGGGCCCTGGACAAGGTATGGGACCTGGACAGGGAATTGGATCAGGGCAAGGAATGGGCC
CTGGACAAGGTATGGGACCTGGACAGGGAATTGGATCAGGGCAAGGAATAG
Protein sequence:
MRPARAFSPPWLLQLVSLTFITVATAKYQGTLICQQRNTQICKTWFVQSDEFQNFNEVET
PTSIRIRENCGFTWMQALTPQQKFYKVLSLSKIKSWKRLHCKRIIMIGMFLDWKEISYAL
GDTVRVRRQTFVPKGRYRGQTQSQYLAINGGSGKDEGKAEAHSAADSSRASVSGNSGMGQ
AQSQSIYDPNCEDCLSARDGKDEAENLKHPGITRPESNRFGISNEWPGVNQGNYIPGQNG
YNPISSQGITPGTGVSHMSGPQGPSYYGPSSRTDGYGPIGSSEKGGYSPNGNYGSPGGYN
KNQYQGTRPGYNYNKPGNEVGSNYIPDGNNGYVDPNANTVNNIYKPPRDSKVLGTIPGQR
ITPGQGMGPGQGMIPGQGIGPGQLLGPGQGMGPGQGIGPGQGLAPGQGIGPGQDLDKEWD
LDKVWDQDKEWDLDKVWDLDRKLDQGKEWALDKVWDLDRELDQGKEWALDKVWDLDRELD
QGKEWALDKVWDLDRELDQGKEWALDKVWDLDRELDQGKEWALDKVWDLDRELDQGKEWA
LDKVWDLDRELDQGKE