| New model in OGS2.0 | DPOGS209477 |
|---|---|
| Genomic Position | scaffold58:+ 4856-6286 |
| See gene structure | |
| CDS Length | 1431 |
| Paired RNAseq reads | 215 |
| Single RNAseq reads | 632 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA014468 (2e-21) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | non-LTR retrotransposon CATS [Bombyx mori] (4e-67) |
| Best NR hit (blastx) | non-LTR retrotransposon CATS [Bombyx mori] (8e-56) |
| GeneOntology terms | ND |
| InterPro families | IPR012337 Ribonuclease H-like IPR002156 Ribonuclease H domain |
| Orthology group | MCL18140 |
Nucleotide sequence:
ATGGACTCGCACACAATTCACTTCCAGAAGAGCATCAAGTTCCTTGGTGTGATTCTGGAT
GATAAACTTAACTTTCGCGAACACATCAACCACATCGTCTACAAAGCAACAAAAATTTTC
AACAGACTCTCCTTCTTCTGCAGACATACATGGGGGGCCCACCCAGAAAACATACGCATT
ATATACTTGCAGGTGATCCAGCTTAACATTACATACGCAGCCGGAGTGTGGGGACACGTG
GCCGATAAGAAGTGCGTGAGGAAGAAACTCCTGTCTATGCAGAGAGCCTTCGCCCTAAAG
GCCATCAGAGGATTCAGGACAGTGTCCACTTCTGCTGCTCTCGCACTCTCCCTGTTCACC
CCCCTGAATCTTAAGGTCAAAGAGGCGAACCGGGTCGAAGCTACGCGCCTCACCGGCTCG
TCCCCACTACTTCCGGCTCACATCACACTGGAGTCTCCAACTCCTCCACATCTTCTCCTT
CATCCAGCCCACAGACATACATACGACTCACACACGTTCTGGACCCAAAACGAGGTCCAG
GAATTTCAGTCAAGAGCTCACCCTAACACCACCCACACCTTCACCGATGGGAGCAAACTT
GAGGATGGTACGGTCGGGGCGGCCTTCGTCAGTTATGATCGAGGACGCAATCCTGTCAGT
AAGAAGTTCAAGCTCCACAACAGTTGTACTGTTTTCCAGGCTGAGCTTCTAGCCATCCTC
AAAGCTTGCGAATGGGCCTCTTCCAACCAACATACAAGCACGGTTATTTATTCAGATAGC
AGCGCTGCCATTCTCGCCATCCAGAACCGCAGCAACACACACCCCTTGGTTGCGAAAATA
CACTCGACAGTACACCACACGTCCGGGTCCATCGAGTTCGCGTGGGTCAAGGCCCACGTG
GGCATAGTGGGGAATGAGGCTGCAGACACCGCTGCCAAGCGGGCGGCTAAGCTCCACAAA
GCCCCGGACTACACACAATTTCCCATCACCTTTATAAAACACTATACACGATCACTCCAC
GCCTCAGTCTGGCAGTCTCGATACGAGAGCGAGCCACAAGGACAACACACTAAACAACAC
CTCCCTACAATTAAACACATCATTAAATTACACTCACTTGCTCACAACACATTCACACTT
ACCCAGACACTTACAGGACACGCCTACACAAAACAATATTTACACAGGGTTAAGGTCACG
GAGAATGCTGTCTGTCCGTGCGATGGCACCACGGTGCAGTCAATGGGTCACGTGCTCGAG
GACTGCCCGCGGTTCATCGCCCCGAGATCCGACCACCAGATTATCTGCAGCCACGCCGGG
GTCTCTCCGTTCAACATGGCCTCCCTTCTGGAGGACAAAGAAGCAACCATATCCTTCATT
AAATTTTCCGAATACATTATCAACCACCTCAAAGCTTTTAACAACACCTAA
Protein sequence:
MDSHTIHFQKSIKFLGVILDDKLNFREHINHIVYKATKIFNRLSFFCRHTWGAHPENIRI
IYLQVIQLNITYAAGVWGHVADKKCVRKKLLSMQRAFALKAIRGFRTVSTSAALALSLFT
PLNLKVKEANRVEATRLTGSSPLLPAHITLESPTPPHLLLHPAHRHTYDSHTFWTQNEVQ
EFQSRAHPNTTHTFTDGSKLEDGTVGAAFVSYDRGRNPVSKKFKLHNSCTVFQAELLAIL
KACEWASSNQHTSTVIYSDSSAAILAIQNRSNTHPLVAKIHSTVHHTSGSIEFAWVKAHV
GIVGNEAADTAAKRAAKLHKAPDYTQFPITFIKHYTRSLHASVWQSRYESEPQGQHTKQH
LPTIKHIIKLHSLAHNTFTLTQTLTGHAYTKQYLHRVKVTENAVCPCDGTTVQSMGHVLE
DCPRFIAPRSDHQIICSHAGVSPFNMASLLEDKEATISFIKFSEYIINHLKAFNNT