New model in OGS2.0 | DPOGS200181  |
---|---|
Genomic Position | scaffold789:+ 44080-54375 |
See gene structure | |
CDS Length | 5892 |
Paired RNAseq reads   | 13980 |
Single RNAseq reads   | 31855 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002931 (2e-123) |
Best Drosophila hit   | Mi-2, isoform C (0.0) |
Best Human hit | chromodomain-helicase-DNA-binding protein 3 isoform 1 (0.0) |
Best NR hit (blastp)   | PREDICTED: similar to Chromodomain helicase-DNA-binding protein Mi-2 homolog (ATP-dependent helicase Mi-2) (dMi-2) [Apis mellifera] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to Chromodomain helicase-DNA-binding protein Mi-2 homolog (ATP-dependent helicase Mi-2) (dMi-2) [Apis mellifera] (0.0) |
GeneOntology terms    | GO:0016887 ATPase activity GO:0005634 nucleus GO:0016564 transcription repressor activity GO:0004003 ATP-dependent DNA helicase activity GO:0004386 helicase activity GO:0016581 NuRD complex GO:0006333 chromatin assembly or disassembly GO:0003682 chromatin binding GO:0003678 DNA helicase activity GO:0005700 polytene chromosome GO:0042766 nucleosome mobilization GO:0003677 DNA binding GO:0008026 ATP-dependent helicase activity GO:0005524 ATP binding GO:0008270 zinc ion binding GO:0005515 protein binding GO:0045449 regulation of transcription GO:0000785 chromatin GO:0007517 muscle organ development GO:0048813 dendrite morphogenesis GO:0031491 nucleosome binding GO:0042623 ATPase activity, coupled |
InterPro families    | IPR013083 Zinc finger, RING/FYVE/PHD-type IPR016197 Chromo domain-like IPR011011 Zinc finger, FYVE/PHD-type IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site IPR000953 Chromo domain IPR019787 Zinc finger, PHD-finger IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR001965 Zinc finger, PHD-type IPR012957 CHD, C-terminal 2 IPR000330 SNF2-related IPR009462 Domain of unknown function DUF1086 IPR009463 Domain of unknown function DUF1087 IPR012958 CHD, N-terminal |
Orthology group | MCL10560 |
Nucleotide sequence:
ATGGCATCAGATGATGAGGTTGATGGATCTTTCGCAGGCGACGAGGACGTAGAAGAAGGT
GAGGGTCAGATTGATAACTCTGGGGAGAGTGATGAAGCACCGCCAAAAGAAGATGATGAT
TACTCTCCAGAAGATGGTAGAAAGAAAAAGAAAGGTAAGAAAAGAAAAGCAAGAGGAGAA
GAAAAGAAAGGAAGAAAGAAAAAGAAGAAGCGAAAGAATGAGAGTGAAGATGATGATGAC
TTTGGTCTGGAGATTGAGGCAGAGGGTGATAGTGATTATGCACTAAGTGCGGTGTCTTCA
AGTAAGAAGTCCCGGAAAGGACGTACCAGCAAACACAATACCTCTGCACCAGCGGTACCA
GACTCGGGATCAGGTATGCCGACAGTTGAAGAAGTGTGCTCTACATTTGGCCTCACAGAC
GTTGATATTCAGTATTCAGATGCGGATCTTGAAAATTTAACAAGCTACAAGTTGTTTCAA
CAACATGTCCGCCCACTTATAGTGAAGGAAAATCCTAAGGTACCAGTGTCGAAGTTGATG
ATGCTGGTAGCGGCGAAATGGCGTCTGTTCTGTGAGAGAAATCCACATCTGGATGGTGGG
AGTCAGAACATGGGCTCCGAAGACAACACTAACACATCCGCCACATCCGACTACACGCCG
AAGAGGCCTGGACGTACACCCAAAGAAACTAAAATCGAGGATTCCATTGATGAGCCTGAG
GAGGAGGACATGAGCGACGAAGGTACGCCCGCTCCTCGCAAGCGTGGCCGCAAGCCAAAG
CACGCGCCACGCGGCAAGCCGGGGCGCAAGCCCAAAGTGCCCACGCTCAAGATCAAGTTC
AGTAAACGGAAACGAACCAGCAGTGAAGAAGATCAAGAAGGAAGCGCTGGTGCGAATACA
GACTCGGATGAAGAATTTGAGCAGTTATTGGCTGAAGCCGAAGAACCGAGACCAGTGGCC
AGTACCACAGAAGAAACCCCGCAACAGAAAGAGGATGATCCGAATTTACCACAACAGCCA
AAGAAGAAGGCTAAAACAAAAATCGGCAACAAGAGTAAAAAGAAGAAAAAAACGAAATCA
ACTAATAAATTTCCAGACGGCGCTGAAGGTGAACAGGAACATCAAGATTACTGCGAGGTG
TGTCAACAAGGGGGTGAAATAATTCTATGTGACACATGTCCCCGGGCGTACCATTTGGTG
TGTTTGGACCCTGAGTTGGAGGAGACGCCGGAAGGTCGGTGGTCGTGTACATACTGCCAG
GCCGAGGGTAATCAGGAACAGGAAGACGATGATGAGCATCAGGAGTTCTGCAGGATTTGC
AAAGACGGTGGAGAGTTATTATGTTGCGACTCGTGTCCGTCGGCGTACCATAGATTCTGT
TTAAATCCACCATTAGAAGAAGTCCCTGATGGTGAATGGAAATGTCCACGATGTAGTTGT
CCACCTTTGGATGGTAAAGTCGCTAAGATTTTAACATGGCGGTGGAAAGAACAGCCGGCC
AAGTCAAAGGCACCACGTTCGAGAGAGTTCTTCGTAAAATGGCATGAACGTTCCTACTGG
CATTGCAGTTGGATTTCAGAGATCCAGTTGGATGTATTCCATCCCCTGATGTATCGCTAC
TATATGCGAAAGTCTGATCCCGAAGAACCGCCTAAGTTGGACGACGGGCTCGAGGAACGC
GAAGGTCGCAGGCGTATGAAGCACAGCAAGCAACATCACCAAGACAACGATGAGAAACTC
CTGGAGGAGAAATACTACAGATACGGCGTGAGACCGGAGTGGCTCATAGTACATCGAGTG
ATTAATCATCGTACAGCCCGCGATGGTACTACGTACTACCTGGTTAAATGGCGAGATTTA
TCTTACGATCAGGCCACTTGGGAATCTGAGCACGAGGATATAGCTGGGCTTAAGAATGCC
CTTGAATATTATCAGGATATGCGCGCTTATATCACTTCGGAAGGCAAAACTAAGGGGAGT
AAAGGCAAAAAGGCCGGTCGTAAGAGTAAGAACAAAGATAACATTGATGACGACGAAAGC
AGCAGTGGTCTGCAGTTCAAAGGAAGGAAGTACAACCCGCCACCTGACCGCCCTACCACC
AACCTAAACAAGAAGTATGAAGATCAGCCGCCTTTCGTTTATGAAACTGGTATGCAGCTT
CATACATACCAGTTGGATGGACTCAATTGGCTGCGGTACTCCTGGGGACAAGGAATTGAT
ACAATACTTGCTGATGAAATGGGTCTCGGCAAAACCATTCAAACTGTGACATTCCTTTAC
TCGTTGTTTAAGGAAGGTCATTGCAAGGGTCCTTTCTTAGTATCTGTACCCCTTTCAACA
ATTATCAATTGGGAGAGAGAGTTCGAGCTGTGGGCTCCAGATTTGTACTGTATTACGTAT
GTCGGTGATAAAGATTCAAGAGCAGTTATTAGAGAAAACGAGCTAACTTTCGACGATGGT
GCCAATAGAGGAGGAAGGCCGTCTAAGATAAAGTCTCAAGTGAAATTCAACGTACTCTTA
ACGTCATATGAACTTATATCAATTGATTCCACGTGTCTCGGTTCTATAGATTGGGCAGTT
CTGGTCGTTGACGAAGCTCACAGACTTAAAAGTAACCAGTCTAAATTTTTCCGTCTCCTT
GCTGGATATCACATTAATTACAAGCTTCTATTGACGGGAACTCCTTTACAAAACAATCTG
GAAGAATTGTTCCATCTTTTGAACTTCTTGAACAAAGATAAGTTTAACGATTTAGCCGCT
TTCCAAAATGAATTCGCGGATGTATCGAAAGAGGAACAAGTCAAAAGGCTTCACGAAATG
TTAGGGCCGCATATGCTGCGTCGTCTTAAGGCTGACGTATTGAAAAACATGCCAGCGAAA
TCTGAGTTCATTGTGCGAGTAGAACTGTCACCCATGCAGAAGAAATATTATAAGTACATC
TTGACGAGAAACTATGAAGCTTTGAACCCTAAGAGCGGTGGTCAAACTGTGTCGTTACTT
AATGTCATGATGGATCTCAAAAAATGTTGCAATCACCCTTATCTGTTCCCTGTAGCGGCA
GAAGAAGCACCGCTCGGACCTCATGGCAATTATGAAACCCAAGCTTTGGTTAAGGCATCT
GGAAAACTTGTGCTCATGTCTAAAATGTTAAAACAGCTCAAAGAACAAGGGCATAGGGTA
CTCATATTCTCTCAAATGACGAAAATGTTGGATATTTTAGAAGATTTCTTAGAAGGGGAA
GGATATAAATACGAAAGAATTGACGGTGGTATTACAGGAACTATCCGTCAAGAAGCCATT
GATAGGTTTAATGCGCCGGGCGCTCAGCAATTCGTTTTCCTTCTCTCAACAAGGGCTGGT
GGTCTCGGAATCAATTTAGCCACGGCCGATACTGTAATTATTTACGATTCGGATTGGAAT
CCTCACAATGATATCCAGGCGTTTTCGCGTGCTCATCGTATCGGTCAAGCCAATAAGGTG
ATGATTTATCGGTTCGTAACACGTAACAGTGTCGAAGAGAGAGTAACGCAAGTTGCGAAA
AGAAAAATGATGTTAACTCACTTGGTTGTGCGTCCGGGGATGGGTGGGAAAGGTGCAAAC
TTTACTAAACAAGAACTGGACGATATCTTGAGATTCGGTACAGAAGAGTTATTCAAAGAA
GAGGAAGGCAAAGAAGAAGCTATACATTACGACGACAGAGCGGTGTCCGAATTACTCGAT
CGTTCGAAAGAAGGTATCGAGCAGAAGGAATCGTGGGCTAATGAATACCTTAGCTCCTTT
AAAGTTGCCAGCTATTCAACCAAAGAAGGCGATGGTGAAGAAGAAGTGGATACTGAGATC
ATCAAACAAGAGGCCGAGAACACCGACCCCGCTTACTGGATCAAGTTACTTAGGCATCAT
TACGAACAGCATCAAGAAGATCAGGCGAGAACTCTCGGTAAAGGCAAGAGAGTTCGCAAG
CAGGTTAATTACAGCGACGGTATAGTTGCTCAGACTGAAAATAGAGAGGATACTACTTGG
CAAGAAAACGGTTCAGATTATAACTCTGATTTCTCCCAGGGCAGTGAAGACGATAAAGAG
GACGACGATTTCGATGAAAAGAACGATAACGGTGATTTACTCAGTCGTCGTAGTAAGAGA
CGTTTGGAGAGAAGGGAAGAAAGAGACAGGCCGTTACCGCCACTGCTTGCTCGTGTCGGT
GGAAATATGGAAGTGCTTGGTTTTAACGCACGACAACGTAAGTCGTTCCTCAACGCCATT
ATGCGATATGGCATGCCGCCGCAGGACGCCTTTAATTCGCAATGGTTGGTCAGAGATCTC
AGAGGAAAATCTGAACGGAATTTCAAGGCGTACGTTTCCTTATTCATGAGGCATTTGTGC
GAGCCAGGCGCTGATAATGCTGAGACATTTGCGGATGGTGTTCCTAGAGAAGGCTTGTCG
AGACAACACGTTCTGACAAGGATTGGTGTCATGAGTCTTATTAGAAAAAAAGTCCAGGAG
TTTGAACACATTAACGGATACTACAGTATGCCAGAATTGATAAGGAAGCCTGTAGAGCCA
GTAAAAATAGCGGGTGCTGAAAGCGCCGCGCCTAGCCCGGCGCCCTCAACAGCTACACCC
ATTACTTCAGCGGCTCCATCACCAGCTCCCACTCAAGTCACTCAAGCATCAGGTCAAGCT
CCAACACCGGGTAGTTCCGAGAAAGATGAGAAGGAAGAGACTAAAGATGACAAATCTGAA
ACTAAGGATAAAGAAAAGGATGAACCGATGGACATTAGTGACATTAAAGAAGAAAAAGAT
AAATTTGACGAAAAGGAAACAAAGGATATTAAAGAAGAGATAAAAGAAGAAAGGAGAATG
TCTGTCGATGAGGAGCCCGCCAAAGATGAAGAAAAATCGGAAGAGAAGAAAGACGAAAAG
GATGAAAAAATCAAAGAAGAAAATAAAGAGGAATCTGATAAGAAGGATGACGCGAGGAGT
GACAAGACCGATTCGGAAGGCTCAGATAAACCGAAAGACGAGAAGAAGGACGAAGATGAC
GACGACGTGGTGATTGTCAAAGAAGAAGACGAGCTGAAAGTGGAGCGGCGCAAGTTCATG
TTTAACATCGCCGACGGCGGCTTCACTGAACTGCACACATTATGGTTGAACGAAGAACGT
GCTGCGGCCCCAGGCAGGGAGTACGAAATATGGCACAGGCGACACGATTACTGGCTGCTG
GCCGGCATCGTGACGCACGGCTACGGTCGCTGGCAGGACATACAGAACGATCTGCGGTTT
GCGATCATCAACGAACCCTTCAAGATGGACGTCGGCAAGGGCAATTTCCTCGAAATCAAG
AATAAGTTCTTGGCCAGGCGGTTTAAGTTGCTGGAACAGGCATTGGTTATAGAAGAGCAG
CTCCGACGTGCCGCTTACCTCAACCTGACGCAGGATCCCAACCACCCGGCTATGTCGCTG
AACGCGCGGTTCGCCGAGGTGGAGTGTCTCGCAGAATCACATCAACACCTCAGCAAGGAA
TCGCTGGCCGGAAATAAGCCCGCTAACGCCGTTTTGCATAAGGTGTTGAACCAGCTGGAG
GAGCTGTTGTCGGATATGAAGTCGGACGTGTCGCGTCTTCCGGCCACGCTGGCTCGCATC
CCGCCAGTGGCTCAGCGTCTACAGATGTCGGAGAGGTCTATACTGTCACGGCTCGCAGCC
ACCGCGGGGAACCCCGTGCCCGCAGCTCAAATGGCCCAGTTCCCTGGTGGTTTCGGGGCG
GGCGGTACTCTGCCCGGATTCTCCCCGGCCGCGGCCGCCGCTGCTAACTTCACTAACTTC
CGGCCGCAGTACTCTGTCCCCGGACAGCCCGCCGCCGCCGCCACAGCCACCGCCTCCAAT
GTGAATATCTAA
Protein sequence:
MASDDEVDGSFAGDEDVEEGEGQIDNSGESDEAPPKEDDDYSPEDGRKKKKGKKRKARGE
EKKGRKKKKKRKNESEDDDDFGLEIEAEGDSDYALSAVSSSKKSRKGRTSKHNTSAPAVP
DSGSGMPTVEEVCSTFGLTDVDIQYSDADLENLTSYKLFQQHVRPLIVKENPKVPVSKLM
MLVAAKWRLFCERNPHLDGGSQNMGSEDNTNTSATSDYTPKRPGRTPKETKIEDSIDEPE
EEDMSDEGTPAPRKRGRKPKHAPRGKPGRKPKVPTLKIKFSKRKRTSSEEDQEGSAGANT
DSDEEFEQLLAEAEEPRPVASTTEETPQQKEDDPNLPQQPKKKAKTKIGNKSKKKKKTKS
TNKFPDGAEGEQEHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEETPEGRWSCTYCQ
AEGNQEQEDDDEHQEFCRICKDGGELLCCDSCPSAYHRFCLNPPLEEVPDGEWKCPRCSC
PPLDGKVAKILTWRWKEQPAKSKAPRSREFFVKWHERSYWHCSWISEIQLDVFHPLMYRY
YMRKSDPEEPPKLDDGLEEREGRRRMKHSKQHHQDNDEKLLEEKYYRYGVRPEWLIVHRV
INHRTARDGTTYYLVKWRDLSYDQATWESEHEDIAGLKNALEYYQDMRAYITSEGKTKGS
KGKKAGRKSKNKDNIDDDESSSGLQFKGRKYNPPPDRPTTNLNKKYEDQPPFVYETGMQL
HTYQLDGLNWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLFKEGHCKGPFLVSVPLST
IINWEREFELWAPDLYCITYVGDKDSRAVIRENELTFDDGANRGGRPSKIKSQVKFNVLL
TSYELISIDSTCLGSIDWAVLVVDEAHRLKSNQSKFFRLLAGYHINYKLLLTGTPLQNNL
EELFHLLNFLNKDKFNDLAAFQNEFADVSKEEQVKRLHEMLGPHMLRRLKADVLKNMPAK
SEFIVRVELSPMQKKYYKYILTRNYEALNPKSGGQTVSLLNVMMDLKKCCNHPYLFPVAA
EEAPLGPHGNYETQALVKASGKLVLMSKMLKQLKEQGHRVLIFSQMTKMLDILEDFLEGE
GYKYERIDGGITGTIRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWN
PHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGAN
FTKQELDDILRFGTEELFKEEEGKEEAIHYDDRAVSELLDRSKEGIEQKESWANEYLSSF
KVASYSTKEGDGEEEVDTEIIKQEAENTDPAYWIKLLRHHYEQHQEDQARTLGKGKRVRK
QVNYSDGIVAQTENREDTTWQENGSDYNSDFSQGSEDDKEDDDFDEKNDNGDLLSRRSKR
RLERREERDRPLPPLLARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDL
RGKSERNFKAYVSLFMRHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQE
FEHINGYYSMPELIRKPVEPVKIAGAESAAPSPAPSTATPITSAAPSPAPTQVTQASGQA
PTPGSSEKDEKEETKDDKSETKDKEKDEPMDISDIKEEKDKFDEKETKDIKEEIKEERRM
SVDEEPAKDEEKSEEKKDEKDEKIKEENKEESDKKDDARSDKTDSEGSDKPKDEKKDEDD
DDVVIVKEEDELKVERRKFMFNIADGGFTELHTLWLNEERAAAPGREYEIWHRRHDYWLL
AGIVTHGYGRWQDIQNDLRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQ
LRRAAYLNLTQDPNHPAMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLE
ELLSDMKSDVSRLPATLARIPPVAQRLQMSERSILSRLAATAGNPVPAAQMAQFPGGFGA
GGTLPGFSPAAAAAANFTNFRPQYSVPGQPAAAATATASNVNI