New model in OGS2.0 | DPOGS212448  |
---|---|
Genomic Position | scaffold15452:- 4209-6246 |
See gene structure | |
CDS Length | 765 |
Paired RNAseq reads   | 104 |
Single RNAseq reads   | 293 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002908 (1e-50) |
Best Drosophila hit   | tetraspanin 47F, isoform B (3e-09) |
Best Human hit | ND |
Best NR hit (blastp)   | GH20509 [Drosophila grimshawi] (5e-16) |
Best NR hit (blastx)   | GA21493 [Drosophila pseudoobscura pseudoobscura] (6e-09) |
GeneOntology terms   | GO:0016021 integral to membrane |
InterPro families    | IPR008952 Tetraspanin, EC2 domain IPR018499 Tetraspanin |
Orthology group | MCL39704 |
Nucleotide sequence:
ATGCTTGTCAACTTCGCCCAAATAAGTAGAAGCTGCGCTCGAACCCTTCTGCTAGTATTG
AACGGGTGTTGCATTCTTTTGGCTCTATGCACCCTGATTTTCGCGGTGGTGGACACGAAA
ATCGTGAAGCAGTATGGAGAGGAACGTGCGAGTGGAACCTTCGTCGGAGACGTCATCATC
AGCGTGGCCTGCTTATTATTGATATCCGTGTCGGCCTTGGGATCGATCGGCGCTGTCAGA
GGGAACATCAAAATCCTTTACATCTACATCGGATTGCTGATGATACTTGTGATGGTGGAA
ATGCTGATCGCTATTTACGTGTCCGTCGAGAGGTACAATCTTGAGTTCAGGGTATCAGAT
TGGCTCAGAGAAGACTTCTTTCGTAACAGCACAGATGAAGATGTCATCCACCTTAGGCTC
TGGGATGATTTGCAAATGACATATGAATGCTGTGGTCTAAATGGGCCAGAAGATTACGCT
GCCATACAATACCATATCAGACTTTCATGCTGTCCACGAGCTTATCGTGCCAGGACCTCT
TACGCACAGCAGCAATTGTATCGAACATGTATCGAAACAGCTACTTATTACACGGAGGGC
TGTGAGGACGAAATCCGAAACATCTTACGATCAGACGCTGACTGGCTCGTCGGCGTCGCG
GTTACGTGTTTCTGGTTTGAGGCTGCGGGAATGCTTCTGGCCATGTGGGTCGCCAACAAC
GCCAGGGACGCCGTGCAAGTCTTCAAAGGCGCTCCTAGATTTTAG
Protein sequence:
MLVNFAQISRSCARTLLLVLNGCCILLALCTLIFAVVDTKIVKQYGEERASGTFVGDVII
SVACLLLISVSALGSIGAVRGNIKILYIYIGLLMILVMVEMLIAIYVSVERYNLEFRVSD
WLREDFFRNSTDEDVIHLRLWDDLQMTYECCGLNGPEDYAAIQYHIRLSCCPRAYRARTS
YAQQQLYRTCIETATYYTEGCEDEIRNILRSDADWLVGVAVTCFWFEAAGMLLAMWVANN
ARDAVQVFKGAPRF