DPGLEAN21860 in OGS1.0

New model in OGS2.0DPOGS209335 
Genomic Positionscaffold1536:+ 26101-26793
See gene structure
CDS Length438
Paired RNAseq reads  41
Single RNAseq reads  251
Migratory profilesQuery via corresponding ESTs
Best Bmobyx hitBGIBMGA004251 (1e-19)
Best Drosophila hit  ornithine decarboxylase 2 (2e-15)
Best Human hitornithine decarboxylase (2e-13)
Best NR hit (blastp)  ornithine decarboxylase [Spodoptera litura] (7e-25)
Best NR hit (blastx)  ornithine decarboxylase [Bombyx mori] (3e-24)
GeneOntology terms





  
GO:0004586 ornithine decarboxylase activity
GO:0005737 cytoplasm
GO:0015940 pantothenate biosynthetic process
GO:0009446 putrescine biosynthetic process
GO:0019467 ornithine catabolic process, by decarboxylation
GO:0005634 nucleus
GO:0005829 cytosol
InterPro families


  
IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal
IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site
IPR002433 Ornithine decarboxylase
IPR000183 Ornithine/DAP/Arg decarboxylase
Orthology groupND

Nucleotide sequence:

ATGGTTATTGAAAAGAGGGTTTCGAAGGCATTAGTATTGGAAAACAATACTGCCGAGGAT
GTCTCCCGAGCTATGATAGAAGGGGGACTTCAGAAGGATCCTTTTTATATATTTGATATG
GACAAGGCTTATCAACGCGTACAATACTTTAAAAATATGATGCCAAGGATAAAAATATTT
TATGCGGTCAAATCGAATGATAGTGACTTTATGTTAAAACTAGCAGCCTCACTTGGCCTT
GGCTTCGATTGTGCTTCACCGGGTGAAATACATAAAGTATTGAAACTCAGAGTATCGCCA
CTGAGTATCGTTTTTGCAATGCCAACAAAAAGTCCAGAGTGGATGTTATATGCAAGACAA
TGCGGGATTAAACACACCACTTTTGACAATTTGTGCGAACTAAATAAAATAAAACAATTC
TGGCCCGATGCAAAGTAA

Protein sequence:

MVIEKRVSKALVLENNTAEDVSRAMIEGGLQKDPFYIFDMDKAYQRVQYFKNMMPRIKIF
YAVKSNDSDFMLKLAASLGLGFDCASPGEIHKVLKLRVSPLSIVFAMPTKSPEWMLYARQ
CGIKHTTFDNLCELNKIKQFWPDAK