New model in OGS2.0 | DPOGS201771  |
---|---|
Genomic Position | scaffold1298:- 12053-18836 |
See gene structure | |
CDS Length | 2682 |
Paired RNAseq reads   | 313 |
Single RNAseq reads   | 827 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008586 (3e-49) |
Best Drosophila hit   | small bristles (7e-17) |
Best Human hit | nuclear RNA export factor 2 (6e-15) |
Best NR hit (blastp)   | hypothetical protein TcasGA2_TC008131 [Tribolium castaneum] (6e-28) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC008131 [Tribolium castaneum] (1e-29) |
GeneOntology terms    | GO:0006406 mRNA export from nucleus GO:0030534 adult behavior GO:0007616 long-term memory GO:0005635 nuclear envelope GO:0016973 poly(A)+ mRNA export from nucleus GO:0005654 nucleoplasm GO:0000166 nucleotide binding GO:0031965 nuclear membrane GO:0051168 nuclear export GO:0006378 mRNA polyadenylation |
InterPro families    | IPR018222 Nuclear transport factor 2, Eukaryote IPR001611 Leucine-rich repeat |
Orthology group | MCL40293 |
Nucleotide sequence:
ATGTCTAATATAAATATCAATGTTGCCTTAACCAACAAAAAGAAAAAAAAGAAACGCAAA
AGGAAGTTTCTTCTTCCACAGCCTAATCCACAAAGTCTTGTAGTGGACACACCAATGACA
AGAATTGCAGCTTTGTTCAAATTACAGCAACAATTAACTAATAAAAACAAACACACTACT
TACGATAGGCCTCTTATGTCAGGTCCTAGATTCAGTCCGCATATGAAATGGGTTAACAAA
AAATTTATGAATCCGCAAGCACAGATCCGCAATTCAACACCACTATCTGCTCAACAAAAT
GATAGTGATACATCAAACAGAAACGAAAATGACAATCTTAATGCAAGCACTTCTAAAAAC
GAAATCTCACAAAATACAACTGCTCAAATCTCTAACCAACTGTCTGAGCCAGTTGCATCT
TCAAGCTTAAATACTAGTGGACAGGATTTTCCTGTATATGATTCCAAAATTACTAATTTC
AATCAAAATATGCACACAAATTATAAATTCCATGAATGTGAGGTATATGACAGTCCGTCG
TTCATTAACTTTGAATCCGAGGAAGGGGTGACCGATTTAAACGATGATGATATTTTCAAC
AAAAATTTATCGAAGGCTGGAGATGAAACAAATAAAAATCAACAAGATATAAACGCTGGT
TTCAAATTGAAATTGCAAGACCAATACCCAAAGATAGCTGAATCGATAAATCAAGATACA
AAAATTAAACAGATCAGTATGAGTCAAACTGACAAAGAAAGTAATGTTATTAAGAAGGAA
TTGCCACAGAACGATTCCAACCAGGATAATCTACCGCCGGCGACATCTGATTCAAATAAG
GTTGTGAGAGAGAGTATTCATGCAAATATTTGTGAACAAAGCAAACACATCGAAACAACT
CAAGCACAAAATGTCCAAAACTTTTTTATGCACAACACCGACTTAGGACCGATGCAATTT
CAAGGATATACAAGCAATAATCTGAATTTAAATCAAAAAATATTTGTTCAGACGGATGAA
TCAAACGTCTCACAGTTGTATTCGCCATCAGATGTCTATGAAGGACTTGCTAAGGAAGAC
TCCCCGGACAGTGAAAGCGTGACTCGTACTAGCGCCTTTCAAAGACTCGGTCCACCCGAA
AAAAAACCCAGGCTTACTATCAACGTCAGCGTCGACACAGATCACTCTATCCGAGATGTA
TCAGATGGGTCGGGGAGGTATATACCAGCTCATGAGAAACAAGAATTACTGGAGAGCAAA
GACGGTACTGTGCTAGCTTTCTTACCTACATGGCCGTGGAAGAACAGCATTGTGACCAGA
AAAACGGTCTCTTACAGGAGTTCCAAGACTCTGATGATGATGAACAAGGAATACATGGAA
GAGAAATACGAAAAGGATTCAGCTTTCTTCTTGATAGCAGTAGAAGGCTATCCGGAGCAA
TGGACGAAGGAAGACGTTTTGGATCTCGTCCTTGATCACTTGAAAGGAAAACATTTTGTT
CCTTGCTTTATAGAATTCACTCCAAAGGAATGCAAATTCTTCGTCATCAGGAGCAAAGGT
GCTCTACTGACCATTCATTCACTGGGTTTTGTTATCCGCAGGGATAATATTGAAGTAAGA
CTGTCGATAGCACAAACTGTGCTCACCTTGAGACAGATTGACTTCTTACCGAGAATAGTT
TTGAGATCGAGACTATGTATGGGATATGACGGTGAGAGTAAGTTGGATTTGAGCGAGTTT
ACCTTGAAAACAGATATAAGCCACTTTATATACTATCCACTTCACCGTAACTTCAATCAA
ACAGAATTAATACACTTGCCCAGTTCTGTGTCGTGGCATACACTGACTGAACTTATATTG
TCACATAACAAAATAACATGCATAGAAGGTTTTAATCTAGATAAATCAACACCTAGGCTG
AATGCTTTAGATCTTTCCCATAACAATATTGAGAGTGTCCTAAGTTTGCTTCCAATTAGA
CAGTTGCATCTACTAAAGCTATCTCTCGAAGAAAATCCTCTTTGTTATGATTACATAGAA
TCAGATCATTATGTCAAAGTGTTGAAGAGTATATTTTCCAGTTTGAGAGAAATAGATGGA
ATTCAAATAATCCACGACTTTGTTCCAAATACAAAACAGAATTATTGTCCAGAAGATTGT
AGGAATATTGTTGAGAAATTTCTAGAAGTATTTTTTCCTTTATTGGAATGTAGTCCTGAT
GACAGAAGACCTATGCAATCTATGTATGCTGATAACGCCGTTATGACGGTTACTCACAGA
GGACAGTTGCGCTACAACACATCAAATAAGCTGGCCTTGAACTTGCTTATTAAAAATAGA
AATATTCTGACCGGTGACCTCGACTATATACAGGGTAGTTCTAATATTTTGAAATTATTG
AAAAAATGGCCAAATATACAGCACGATCCCTCCACGTTCACTGTTGACGTTGTTTATTCT
ACAGATACATACATAACATTCACGATAAACGGCGTCTTCAAAGTAACGGCCGAGACACTG
GCGGAAAACGAAAGTCTTTTAACGTTCGCACGTACAGTAACGTTGTATTCCGCAAATGGC
TTTGAATACAAAATAACCAATGAGATGGTTCACATCGACGAACCTTATTATGAATGGGAA
AAAAAAGCTTTTCAAATTGTTTCGGTGAGTTTCATTTTTTAA
Protein sequence:
MSNININVALTNKKKKKKRKRKFLLPQPNPQSLVVDTPMTRIAALFKLQQQLTNKNKHTT
YDRPLMSGPRFSPHMKWVNKKFMNPQAQIRNSTPLSAQQNDSDTSNRNENDNLNASTSKN
EISQNTTAQISNQLSEPVASSSLNTSGQDFPVYDSKITNFNQNMHTNYKFHECEVYDSPS
FINFESEEGVTDLNDDDIFNKNLSKAGDETNKNQQDINAGFKLKLQDQYPKIAESINQDT
KIKQISMSQTDKESNVIKKELPQNDSNQDNLPPATSDSNKVVRESIHANICEQSKHIETT
QAQNVQNFFMHNTDLGPMQFQGYTSNNLNLNQKIFVQTDESNVSQLYSPSDVYEGLAKED
SPDSESVTRTSAFQRLGPPEKKPRLTINVSVDTDHSIRDVSDGSGRYIPAHEKQELLESK
DGTVLAFLPTWPWKNSIVTRKTVSYRSSKTLMMMNKEYMEEKYEKDSAFFLIAVEGYPEQ
WTKEDVLDLVLDHLKGKHFVPCFIEFTPKECKFFVIRSKGALLTIHSLGFVIRRDNIEVR
LSIAQTVLTLRQIDFLPRIVLRSRLCMGYDGESKLDLSEFTLKTDISHFIYYPLHRNFNQ
TELIHLPSSVSWHTLTELILSHNKITCIEGFNLDKSTPRLNALDLSHNNIESVLSLLPIR
QLHLLKLSLEENPLCYDYIESDHYVKVLKSIFSSLREIDGIQIIHDFVPNTKQNYCPEDC
RNIVEKFLEVFFPLLECSPDDRRPMQSMYADNAVMTVTHRGQLRYNTSNKLALNLLIKNR
NILTGDLDYIQGSSNILKLLKKWPNIQHDPSTFTVDVVYSTDTYITFTINGVFKVTAETL
AENESLLTFARTVTLYSANGFEYKITNEMVHIDEPYYEWEKKAFQIVSVSFIF