New model in OGS2.0 | DPOGS204036  |
---|---|
Genomic Position | scaffold452:+ 68625-71615 |
See gene structure | |
CDS Length | 1263 |
Paired RNAseq reads   | 398 |
Single RNAseq reads   | 1018 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004784 (0.0) |
Best Drosophila hit   | crowded by cid (1e-148) |
Best Human hit | polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform 1 (4e-147) |
Best NR hit (blastp)   | PREDICTED: similar to CG5970-PA [Apis mellifera] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to CG5970-PA [Apis mellifera] (0.0) |
GeneOntology terms    | GO:0000214 tRNA-intron endonuclease complex GO:0005524 ATP binding GO:0016301 kinase activity GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation GO:0000166 nucleotide binding GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity GO:0051733 polydeoxyribonucleotide kinase activity GO:0016740 transferase activity GO:0030423 targeting of mRNA for destruction involved in RNA interference GO:0006397 mRNA processing GO:0035087 siRNA loading onto RISC involved in RNA interference GO:0005634 nucleus GO:0046404 ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity |
InterPro families   | IPR010655 Pre-mRNA cleavage complex II Clp1 |
Orthology group | MCL14847 |
Nucleotide sequence:
ATGACTGAAGTGCAATTACAAGAGATTAAATTAGATCCCGATTCTGAACTTCGTTTTGAA
GTTGAAACGAAAAATGAAAAAGTCGTTTTAGAGGTTAAGAGCGGCTATGCCGAGTTATTC
GGCACAGAATTGGTCAAAGGCAAGCCCTATGAATTCCACACGGGAGCGAAAGTTGCTGTG
TTCACGTGGCATGGCTGTACAGTGGAATTGCGAGGACGTACAGAAGTTAGTTATGTCGCC
AAAGAAACTCCTATGGTTGTATACTTAAATGTACATGCAGCATTAGAACAGCAAAGGGTA
GCGGCTGAACACGAAAATACAAGAGGACCGGTGACTATGGTTGTGGGTCCCGGAGATGTT
GGTAAATCCACATTAACGAAGATACTCCTTAATTATGCGGTGCGGATGGGTCGACGACCT
ATATTTGTAGACCTGGATGTTGGCCAAGGACATATAAGTGTTCCAGGAACTATTGGTGCA
TTATTAGTTGAGCGTCCAGCCTCTATAGAAGAGGGTTTTAGTCAGCAAGCGCCGCTAGTG
TACCACTTTGGTCACAAATCACCCGGCGACAACTTGGAGCTATACAACATGATTGTGTCA
CGTCTGGCTGAAGTTATCGCTGAGAGATGTGAAAATAATAAGAAAGCATCAACGTCAGGA
GTGATCATCAATACATGTGGATGGGTGAAGGGAACAGGGTACAAAGTACTGACACATGCT
GCCCAGGCTTTTGAGGTCGATGTTATATTGGTGTTGGACAACGAGCGTCTCTACAATGAA
CTGAAGAGGGACATGCCGAAGTTTGTGAAAGTTGTTTATTTACCAAAAAGTGGAGGGGTA
GTTGAACGTTCCTCCACACAACGAGCTGAGGCCCGAGACGCTCGTATAAGGGAATACTTC
TATGGAAATCGGACACCATACTACCCACATTCATTTGATGTTAAGTTCTCAGACCTTAAG
ATCTACAAGGTGGGCGCCCCCTCTCTGCCAGACTCTTGTATGCCTCTGGGTATGCGTTCG
TCTGATGCTCTGACCCGCCTGGTGCCGGCCTGGCCGTCTCCGTCTCTGGCGCACCGGGTT
CTGGCCGTGTCCTTCGCCCCATCACCAGACGACCACGTGCTCGCGACCAACCTGGCTGGA
TTCGTTTGTGTTACTGCGGTGGACATGGATCGTCAGACGATGACCATCCTATCTCCTCAG
CCTCGCCCGCTGCCAGATACTATACTGCTTCTCTCAGACTTGCAGTACATGGACAACCAC
TAG
Protein sequence:
MTEVQLQEIKLDPDSELRFEVETKNEKVVLEVKSGYAELFGTELVKGKPYEFHTGAKVAV
FTWHGCTVELRGRTEVSYVAKETPMVVYLNVHAALEQQRVAAEHENTRGPVTMVVGPGDV
GKSTLTKILLNYAVRMGRRPIFVDLDVGQGHISVPGTIGALLVERPASIEEGFSQQAPLV
YHFGHKSPGDNLELYNMIVSRLAEVIAERCENNKKASTSGVIINTCGWVKGTGYKVLTHA
AQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSGGVVERSSTQRAEARDARIREYF
YGNRTPYYPHSFDVKFSDLKIYKVGAPSLPDSCMPLGMRSSDALTRLVPAWPSPSLAHRV
LAVSFAPSPDDHVLATNLAGFVCVTAVDMDRQTMTILSPQPRPLPDTILLLSDLQYMDNH