New model in OGS2.0 | DPOGS208884  |
---|---|
Genomic Position | scaffold1599:+ 18662-23793 |
See gene structure | |
CDS Length | 630 |
Paired RNAseq reads   | 6 |
Single RNAseq reads   | 39 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002556 (7e-34) |
Best Drosophila hit   | nicotinic acetylcholine receptor alpha 80B (7e-44) |
Best Human hit | neuronal acetylcholine receptor subunit beta-2 precursor (2e-16) |
Best NR hit (blastp)   | nicotinic acetylcholine receptor subunit alpha 4 isoform 1 [Bombyx mori] (2e-60) |
Best NR hit (blastx)   | nicotinic acetylcholine receptor subunit alpha 4 isoform 2 [Bombyx mori] (6e-59) |
GeneOntology terms    | GO:0005892 nicotinic acetylcholine-gated receptor-channel complex GO:0004889 nicotinic acetylcholine-activated cation-selective channel activity GO:0045211 postsynaptic membrane GO:0006811 ion transport |
InterPro families    | IPR006029 Neurotransmitter-gated ion-channel transmembrane domain IPR006201 Neurotransmitter-gated ion-channel |
Orthology group | MCL19919 |
Nucleotide sequence:
ATGGCGCCGTGGGTCAAACGAGTCTTCATACATATCCTGCCCAGACTGTTGTTCATGAAA
CGACCTCAGTACAAATTCGATACAACAAGGTTAAGTGAAAGTAACCGGTTTGGTGGCAGC
TGCGTTGTCCACGGTTCTAGCGAGGGCGGAGCACTACCAGTTCCCGAGGAGGAGGCTCTT
AGTCCTGTACCGGAGCCCCCGCCTGGCTTCAGTCACTCCTCCTGTCCCCCTGAAGTACAT
AGAACGTGTTTCTGCGTGAGATTCATAGCAGAACATACTAGGATGTTGGAAGACTCAACT
AAGGTCAAAGAAGATTGGAAATACGTTGCGATGGTGCTCGATCGTTTATTCTTATGGATA
TTTACCTTGGCGGTTTTAGTTGGGACCGCCGGCATTATCCTTCAAGCGCCCACGTTATAT
GACGACAGAGTGCCCATTGATAAACATTTCAATCAAATAGCAACGTCCTCGCTAGTCAGT
TCTAAAGTGAACGATCGTTCGCTGGACCACCGCACACCCGTCCTGCCGCACGTGTTCTAT
TCCACGACACCTACTGTTAATAAGACAGACGTGAAGTTGGCGCGAGTCACTTCGCAAAAA
GGGGCTAATTCAAGTCTTCTTCAGCGTTAA
Protein sequence:
MAPWVKRVFIHILPRLLFMKRPQYKFDTTRLSESNRFGGSCVVHGSSEGGALPVPEEEAL
SPVPEPPPGFSHSSCPPEVHRTCFCVRFIAEHTRMLEDSTKVKEDWKYVAMVLDRLFLWI
FTLAVLVGTAGIILQAPTLYDDRVPIDKHFNQIATSSLVSSKVNDRSLDHRTPVLPHVFY
STTPTVNKTDVKLARVTSQKGANSSLLQR