| New model in OGS2.0 | DPOGS203737 |
|---|---|
| Genomic Position | scaffold2255:+ 17083-40055 |
| See gene structure | |
| CDS Length | 2685 |
| Paired RNAseq reads | 3450 |
| Single RNAseq reads | 8191 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013369 (4e-66) |
| Best Drosophila hit | vinculin (0.0) |
| Best Human hit | vinculin isoform VCL (7e-82) |
| Best NR hit (blastp) | GA17230 [Drosophila pseudoobscura pseudoobscura] (0.0) |
| Best NR hit (blastx) | GA17230 [Drosophila pseudoobscura pseudoobscura] (0.0) |
| GeneOntology terms | GO:0007155 cell adhesion GO:0005925 focal adhesion GO:0007016 cytoskeletal anchoring at plasma membrane GO:0003779 actin binding GO:0005198 structural molecule activity GO:0015629 actin cytoskeleton GO:0006911 phagocytosis, engulfment |
| InterPro families | IPR006077 Vinculin/alpha-catenin IPR017997 Vinculin |
| Orthology group | MCL13604 |
Nucleotide sequence:
ATGCCTGTTTTCCATACAAAGATCATAGAGAGCATCCTTGAGCCGGTGGCTCAACAGGTA
TCTCGTCTCGTCATACTCCATGAGGAAGCTGAGGATGGGAACGCCATGCCGGACCTGGCC
AGGCCGGTACAGGCCGTCTCACTGGCCGTCAACAACCTCGTTAAGGTGGGTCACGAGACC
ATAGAGTCAGCTGATGACAATTTACTCCGGGCCGACATGCCGGGGGCTCTGCACAGGGTC
GAGGGGGCGGCGACACTACTGCAACAGGCATCTGACATGCTCAGAGGAGACCCATACTCA
GGACCCGCCAGGAAAAAGCTCATCGAAGGCTCACGGGGTATCCTCCAAGGCACGTCAGCT
TTGCTTCTTTGCTTCGACGAGTCCGAAGTTAGGAAAATTGTCAAGGAGTGTAAAAAGGTG
TTAGACTATCTAGGTGTTGCAGAAGTGATCGACACCATGGAGGACCTCGCTCAGTTCCTG
CGAGATATCTCACCAGCTCTATCCAAAGCAGCGAGGGAGGTGGCGGCGCGTGCAGCTGAA
CTGACCCACCCTCCGCACGCGGAGACCCTCGCCCGTTGTCTGGAGAGCGTCAAGCGACTT
GCCCCAGTACTCATCTGCGCCATGAAGACATACATACACATACTGTCAGAAGGAGGCAAA
GGCATTGAAGATGCGGCGGAGAACAGGAACTACCTGGCCCAGAGGATGGCGGACGAGATA
CATGAAATCATCAGGGTGTTACAATTGACGTCGTACGTGGAGGACGGCGGCGAGAAAGAC
AACATCGCCGTGTTGAAGGCCTTACAGAGTCTGGTGCACAGTAAAGTGCTCGCCGCTAAT
GAGTTTCTTGATGACCCTGAGGCTCAGCGGACCAGTGCCGGCGAGAGAGCTCTACGAGCA
GCGCTCACGGCCGCTGCGCGGGCCGCCGAACACACCGACACACATCTCGCTGACAGACTG
CGACGAGCTGCCAGGAACGGCGGTATCAACGCGGACCTGCTGTGCGACGAGCGGCAGTAC
GGACGAGGGAGGGAGCAGAAGGCGCTGACCCTGGCCGCGGAGCTGAAGGCGCAGCTGAGG
GACGTACAAGGAACCGTGAACGAGGGAGTGCGAGCCGCGGAGAAGATACAAGGAGGGAAG
ACCATAGCCGCCAGATTGGAAACCGCCCACAAGTGGCTGGTGCACCCCGCGTGTGATCCC
ACCACCAGGGTCGAGGGACAGAAGGCTATCAACAGTATCGTGTCGCAGGGACAGAGGATA
GCTGACAACCTCCATGGGCGGGAGAAAGCCGAGGTGATGCAGCTGTGCTCCGAGGTACAA
AGGCTGGCCGACCAGCTCGCTGACCTCTGTATGACTGGAGACGGCGACCAGGAGGAGGCC
AGGACGCTCACACGCCAGCTGACCGGCAAGCTGCACGAGCTGAAGCGTGCCATGGAGCGA
GCGGTGGTCAACAGAGTGGTGGAGGACTTCATAGATGTGGCCGCTCCTCTCAGACACTTC
ACTGACGCTGTGAACGCGCCTGAAGGTACACCGAACCGCGAGGGTAACTTCCACGACAAG
GCCACGTCCCTGGCCAGCTTCAGCTCCCGAGCCGCGGCCGCCGCCGCCATGGTCGCCGCA
GACATCACACACGACAAGAGACTCGTCGACCAGCTGCTGCAACACGCGCAGGAGGTGGAG
AAGTTATCGCCTCAGCTGATCTGCGCCGGCAAGATCCGTCTGCACTACCCAGAAAGCAAA
GTGGCCGAGGAACACTTCAACAACCTGAAGTCTCAATACTCTGACGCCGTTCTTCGCTGT
CGCGACCTCTGCGACCAGGCGGTCGACCCGCTGGAGTTCGTCCGCACCGCTGGTGAACTC
ATTCAGAAGCACACGTATCTGTGCGAGGACGCCATAAGGAACAACGACTCGCAGAAGATG
GTGGACAACACATCGGCCATCGCCAGGTTGGCGAACCGCGTGTTGCTGGTGGCTGGTCGC
GAGCGGGATAACACAGAAGACGGAGCCTTCAGCGCCGCCCTGGGGACAGCCCAGAGCAGG
CTGCAGGCGGCGCTGGCGCCCGCCGTCCGAGCCGCCAAGAGTGTCGCCCTCGGGCAACCC
GGCGCCCCCCCACACTGGAGAACCGCTAACGGAGAGGTAGGCACTGTATCATCCAAGCCA
TCAGCGGTGTGGAGGAGGCCCTCTCCCGTCACTACGCCCCTCCCCCTCCGTCCCCCCCTC
CGCCGCCGTCGCTCCCCCCTCTCTTCCATGTCGGCGCCCCCTCGCCCGCCGCCGCCGGAC
ACAGACGACGAGGGTGAAGACATCTTCAGAAGACAGCCTCACCCGAGCCAACCTATCTTG
GTGGCGGCCCACAACCTGCACAAGGCGGTCCGCGAGTGGTCCTCCAAAGACAACGAGATC
ATCGCCGCCGCCAAGCGGATGGCCATACTCATGGCGCGCCTGTCCGACCTCGTGCGCTCC
GACTCCAAGGGAAGTAAGCGTGAGTTGATAGCTACTGCGAAGGCTATAGCTGAGGCTTCA
GAGGAAGTAACTCGCCTCGCTAAGAAACTGGCTCTAGAGTGTACTGATAAGAGAATCAGA
ACTAATCTCCTCCAGGTGTGTGAACGTATCCCCACCATCGGCACTCAACTCAAGATACTG
TCAACTGTCAAGGCCACTATGCTCGGAGCCCAGGGTAAGCAGTGA
Protein sequence:
MPVFHTKIIESILEPVAQQVSRLVILHEEAEDGNAMPDLARPVQAVSLAVNNLVKVGHET
IESADDNLLRADMPGALHRVEGAATLLQQASDMLRGDPYSGPARKKLIEGSRGILQGTSA
LLLCFDESEVRKIVKECKKVLDYLGVAEVIDTMEDLAQFLRDISPALSKAAREVAARAAE
LTHPPHAETLARCLESVKRLAPVLICAMKTYIHILSEGGKGIEDAAENRNYLAQRMADEI
HEIIRVLQLTSYVEDGGEKDNIAVLKALQSLVHSKVLAANEFLDDPEAQRTSAGERALRA
ALTAAARAAEHTDTHLADRLRRAARNGGINADLLCDERQYGRGREQKALTLAAELKAQLR
DVQGTVNEGVRAAEKIQGGKTIAARLETAHKWLVHPACDPTTRVEGQKAINSIVSQGQRI
ADNLHGREKAEVMQLCSEVQRLADQLADLCMTGDGDQEEARTLTRQLTGKLHELKRAMER
AVVNRVVEDFIDVAAPLRHFTDAVNAPEGTPNREGNFHDKATSLASFSSRAAAAAAMVAA
DITHDKRLVDQLLQHAQEVEKLSPQLICAGKIRLHYPESKVAEEHFNNLKSQYSDAVLRC
RDLCDQAVDPLEFVRTAGELIQKHTYLCEDAIRNNDSQKMVDNTSAIARLANRVLLVAGR
ERDNTEDGAFSAALGTAQSRLQAALAPAVRAAKSVALGQPGAPPHWRTANGEVGTVSSKP
SAVWRRPSPVTTPLPLRPPLRRRRSPLSSMSAPPRPPPPDTDDEGEDIFRRQPHPSQPIL
VAAHNLHKAVREWSSKDNEIIAAAKRMAILMARLSDLVRSDSKGSKRELIATAKAIAEAS
EEVTRLAKKLALECTDKRIRTNLLQVCERIPTIGTQLKILSTVKATMLGAQGKQ