| New model in OGS2.0 | DPOGS203046 |
|---|---|
| Genomic Position | scaffold558:- 16132-18043 |
| See gene structure | |
| CDS Length | 1347 |
| Paired RNAseq reads | 283 |
| Single RNAseq reads | 771 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006797 (3e-158) |
| Best Drosophila hit | CG3645, isoform B (1e-131) |
| Best Human hit | tRNA-dihydrouridine synthase 1-like (3e-114) |
| Best NR hit (blastp) | PREDICTED: similar to CG3645-PA, isoform A isoform 2 [Apis mellifera] (8e-159) |
| Best NR hit (blastx) | PREDICTED: similar to CG3645-PA, isoform A isoform 2 [Apis mellifera] (9e-148) |
| GeneOntology terms | GO:0050660 FAD binding GO:0055114 oxidation reduction GO:0008033 tRNA processing GO:0017150 tRNA dihydrouridine synthase activity |
| InterPro families | IPR013785 Aldolase-type TIM barrel IPR001269 tRNA-dihydrouridine synthase IPR018517 tRNA-dihydrouridine synthase, conserved site |
| Orthology group | MCL13321 |
Nucleotide sequence:
ATGGTAGATGCCAGTGAATTGGCATGGAGATTACTCAGTCGAAGACACGGTGCTACGCTT
TGTTATACCCCCATGTTACACAGTACCGTATTTATTAAAGACCCTAAATACAGAAAAGAG
AATTTTACAACATGTACTGAAGACAGACCATTATTTGTTCAGTTCTGTGGTAATAATCCA
GAAACAATGGCTGCCGCTGCTAAACTTGTAGAAAGTGATTGTGATGCTATAGACATTAAT
TTGGGTTGCCCACAATCTATTGCTAAAAGGGGAAGATATGGGTCCTTTCTTCAAGAGGAG
TGGCAGTTATTAAGAGACATAGTTTCTACTATGTCAAAAACAGTGTCTGTACCAATTACA
TGTAAAGTGAGAGTCTTTGAAAGCATTGAAAAATCTGTGCAATATGCGTTGATGCTACAA
GAGGCTGGGTGTAAGCTATTGACTGTTCATGGCAGAACTAGAGAACAAAAGGGACCTTTG
ACAGGTATTGCTAGTTGGGAGCATATTAAAGCCATTCGAGATGCAATTTCCATACCAATG
TTTGCAAATGGAAATATACAATGCTTACAAGATGTTGAACGATGTTTGCAATATACAAAA
GTTGATGGTGTAATGAGTGCAGAAGGTAATCTTACAAATCCAGCAATATTTGAAGGAATA
AACTCTGTATCATGGGAGATTGCTTTAGAATATCTTGACCTTGTGGAGACATACCCCTGC
CCAACATCATACATAAGAGGTCACCTATTCAAAATCTTTCATAAAGTATTCACTTTTGAT
AGCAATAATGAAGAAAGACAGTTGTTGGCTACAGCTCAATGCCTAGATGATTTTAAACAA
GTGTGCATTAAAATAAAAAATAAGTATTTGCCCTATCATGAGGGGAGATTGCAATTTGAT
GATAATGAAGGAATTACAAGAAATCAAAAAAGTTTAATTCTTCCACCATGGATCTGTCAA
CCATATGTGAGAATGTCTCCTGATGAACATACAAAGAAAATGGAGAGGATAGTAAATAGT
CAGGATAATAACAATGATTCTAAAAGAACTTTCGAAGACAATGATGGCAACAAAATATCA
AGAAAAAAAATGAAAAAAATGCGAAGGGTTATGAGGCGACCGGTCAAACCTGAGGAAGCA
TTGAAAAATAGTAGGAGTGGTGATATATGTGTTAATGACACATGCCCCAATCCCCTTGGA
GGGAAATGCGAATATCAGCTTTGCAAAAAATGTTGCAGAAATAAATGTTATGAGGAAAAT
AGAGATTGCAAAGGTCATAGAATATTGGTGAAAACAAGGAGAGAAATGGCTATTAGTTTT
GCACAAAACGCTGACAAAATTGCTTGA
Protein sequence:
MVDASELAWRLLSRRHGATLCYTPMLHSTVFIKDPKYRKENFTTCTEDRPLFVQFCGNNP
ETMAAAAKLVESDCDAIDINLGCPQSIAKRGRYGSFLQEEWQLLRDIVSTMSKTVSVPIT
CKVRVFESIEKSVQYALMLQEAGCKLLTVHGRTREQKGPLTGIASWEHIKAIRDAISIPM
FANGNIQCLQDVERCLQYTKVDGVMSAEGNLTNPAIFEGINSVSWEIALEYLDLVETYPC
PTSYIRGHLFKIFHKVFTFDSNNEERQLLATAQCLDDFKQVCIKIKNKYLPYHEGRLQFD
DNEGITRNQKSLILPPWICQPYVRMSPDEHTKKMERIVNSQDNNNDSKRTFEDNDGNKIS
RKKMKKMRRVMRRPVKPEEALKNSRSGDICVNDTCPNPLGGKCEYQLCKKCCRNKCYEEN
RDCKGHRILVKTRREMAISFAQNADKIA