New model in OGS2.0 | DPOGS203048  |
---|---|
Genomic Position | scaffold558:- 6992-11505 |
See gene structure | |
CDS Length | 2544 |
Paired RNAseq reads   | 2145 |
Single RNAseq reads   | 4713 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA014046 (0.0) |
Best Drosophila hit   | CG8939 (2e-173) |
Best Human hit | putative rRNA methyltransferase 3 (2e-111) |
Best NR hit (blastp)   | PREDICTED: similar to ribosomal RNA methyltransferase [Nasonia vitripennis] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to CG8939 CG8939-PA [Tribolium castaneum] (0.0) |
GeneOntology terms    | GO:0006364 rRNA processing GO:0005730 nucleolus GO:0008649 rRNA methyltransferase activity GO:0031167 rRNA methylation GO:0003676 nucleic acid binding |
InterPro families    | IPR015507 Ribosomal RNA large subunit methyltransferase E IPR012920 Spb1, C-terminal IPR002877 Ribosomal RNA methyltransferase RrmJ/FtsJ |
Orthology group | MCL13836 |
Nucleotide sequence:
ATGGGAAAGAAAACGAAAGTAGGAAAACAGCGAAAAGATAAATATTATCAACTTGCTAAA
GAAACAGGTTTTAGGTCAAGAGCTGCTTTTAAGTTAATACAGTTAAATCGAAAATTTGGT
TTTCTCCAAAAATCGCGAGTATGTATCGATTTATGTGCTGCTCCCGGAGGATGGATGCAG
GTGGCTCACCAAAACATGCCTGTATCCAGTGTTGTAATAGGTGTCGATTTGTTCCCTATA
AAACAAGTACCTGGCTGCATCAGTCTGACTGAGGATATAACAACAGAAAAATGTAAAACT
GCTATTAAGAAAGAAATCAAAACATGGAAAGCTGATGTTGTACTTCATGATGGTGCTCCA
AATGTTGGTCTAAATTGGATCCATGATGCTTACCAGCAGGCTTGCCTCACTTTAAGTGCA
TTAAAATTAGCATCACACTTCTTGAGAGAAGGTGGATGGTTTGTGACTAAAGTCTTCAGG
TCAAAAGATTATCATGCATTACTGTGGGTGCTAAAACAATTTTTTAAGAAAGTACATGCT
ACAAAACCACAAGCATCTCGTAATGAATCTTCTGAGATATTCGTTGTGTGCCAAGGATAT
ATAGCCCCAGACAGTATTGATCCCAAACTTTTAGACCCGAAACATGTGTTTGAAGATCTT
GAAATAGTTAAAAAGCAACAAATGAATCTTTTGCATCCTGAAAAACAGAAAAAACCCAAA
GCTGAGGGTTATAAAGAAAATGATTACACAACATACCACAGTGTTCCTATATCAGAATTT
TTGGATAAAGAGGATCCCATAGACTTACTACAGGGGTGCTCTGAGATAATAATAGATGAT
AAATCTGTACTCAGCCATCCTAAGACCACAAAAGAAATTATAGAATGCTGCAAAGACATA
AAGGTTTTGGGAAGGAAGGATGTGAAAGCTCTTTTAAGTTGGATAAAACATCTCAAAGAT
TGGAAAGCATCGCAGAATGCTACAGAAGAAACAGAGAAGAAAGATGACAATGATAAAGAA
GTAGAAGAAGCTTCTGGTGATGAAAATGATAAAGTCGATAATGAGATAGCTGACCTACAG
GATGAAGAAAAGAGGCAACTGAAACGAAAAAGGAAGCAGTTGAATAAACAGAGACAGAAA
TTAGCGGAGAAAATGAACCTTAAAATGGTTTTGAAAGGAGATGATGGACCAATATTAGAA
AGCCATGACATGTTTTCTCTCTCCGACATCAAGAACACCCAACAATTAAATATGATAGTT
GACCAACAACCAGACATAGTATTGGAGAAAGAGGATTCCGATGACGAATTGAAGAAGAAG
GCGAAGTTTGTTAAATATGATATAGAGGAATCCAAGCTGGATTCATCAGGACTGTTCTAC
AAGGATTCCGACAGTGAGCTGGAAATGGAATCCGATTCGGACGATGAAAAGGAGAAAGAG
ACTTTGGCATTTTCTGACTCCGACAATGAATCAAAGAAAATTGACAAGCTGACAAAGTTG
AATACATTGAGGAACAGCAAGATCAGTAAAGAAAAGCCCATACCTAAGAATAATCCATTG
CTGACAGACCTCGACGACACAGATCCAGTGTCTAAGAGAACTAAGAAGGCTGAGCTCTGG
TTCGAGAAGGACAGCTTTAAAGAAGTTGATGAGGAAGATGACGAAGGAGTCGACTTGGAT
AAATTAGCTGAGACATACAGGGGTAAAGGAAAAAAGGTAAAGGATCTGTCAATGGGAATA
AGTGACATAAAGAAGTCTGGTGTGAAGAGGAAGAACGAAGAGAGTTCAGAGGAATCATCG
GACAGTGATTATGATGTGGAGGAAAATGTGTCGCCTACTGATAAAAGTGGAGCAAAAACA
ACAAAGAAGGATGGATTTGAAGTGGTCACACAGGATCCCGAATTAAAGCGTCTGAAGAAA
AATTTAAAAATGGATGCTGAAACTCTAGCGTTGGGCACAATGATAGCCACTTCGAAGAAA
TTTAAACGAGACCTAATCGATGATGGCTGGAATCGATACGCCTTCAACGATACTAACCTA
CCTGATTGGTTTGTAGAAGACGAAAAGAAACATATGAGGAAAGATATTGTAGTACCAGAG
AAATACACCGAGGAGTACAAAAATAGATTACAAGACATAAACGCAAGACCAATCAAGAAG
GTTGTCGAAGCAAAGGCTAGGAAGAAGAAGCGTATGATCAAGAAAATGGAACGAGCGAAG
AAGAAGGTCGAGGCTGTTATGGAAAACGCTGATATGTCAGAAAGAGAAAAGGCTCAACAA
GTTAGACAGCTGTATAAAAAGGCGCAAACAGAAAATAAAAAGAAAGTCACATATGTGGTC
GCCAAAAAACATACGACCGCCAAACGTATGAAACGACCTACCGGGGTGAAGGGTCAATAT
AAAGTGGTGGATCCGAGGATGAAGAAAGATCTACGAGCCCAGAAGGCGAAGGAGAAAACT
AAGGGTCGCGGCAAGAAAGCGGGCAAGACGGGCAAGACAAACAAACAGAGACCCGCGAAG
AAAAAAGGGAATAAGGCCAAATGA
Protein sequence:
MGKKTKVGKQRKDKYYQLAKETGFRSRAAFKLIQLNRKFGFLQKSRVCIDLCAAPGGWMQ
VAHQNMPVSSVVIGVDLFPIKQVPGCISLTEDITTEKCKTAIKKEIKTWKADVVLHDGAP
NVGLNWIHDAYQQACLTLSALKLASHFLREGGWFVTKVFRSKDYHALLWVLKQFFKKVHA
TKPQASRNESSEIFVVCQGYIAPDSIDPKLLDPKHVFEDLEIVKKQQMNLLHPEKQKKPK
AEGYKENDYTTYHSVPISEFLDKEDPIDLLQGCSEIIIDDKSVLSHPKTTKEIIECCKDI
KVLGRKDVKALLSWIKHLKDWKASQNATEETEKKDDNDKEVEEASGDENDKVDNEIADLQ
DEEKRQLKRKRKQLNKQRQKLAEKMNLKMVLKGDDGPILESHDMFSLSDIKNTQQLNMIV
DQQPDIVLEKEDSDDELKKKAKFVKYDIEESKLDSSGLFYKDSDSELEMESDSDDEKEKE
TLAFSDSDNESKKIDKLTKLNTLRNSKISKEKPIPKNNPLLTDLDDTDPVSKRTKKAELW
FEKDSFKEVDEEDDEGVDLDKLAETYRGKGKKVKDLSMGISDIKKSGVKRKNEESSEESS
DSDYDVEENVSPTDKSGAKTTKKDGFEVVTQDPELKRLKKNLKMDAETLALGTMIATSKK
FKRDLIDDGWNRYAFNDTNLPDWFVEDEKKHMRKDIVVPEKYTEEYKNRLQDINARPIKK
VVEAKARKKKRMIKKMERAKKKVEAVMENADMSEREKAQQVRQLYKKAQTENKKKVTYVV
AKKHTTAKRMKRPTGVKGQYKVVDPRMKKDLRAQKAKEKTKGRGKKAGKTGKTNKQRPAK
KKGNKAK