| New model in OGS2.0 | DPOGS203050 |
|---|---|
| Genomic Position | scaffold558:+ 25605-30863 |
| See gene structure | |
| CDS Length | 3258 |
| Paired RNAseq reads | 940 |
| Single RNAseq reads | 2426 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA014045 (0.0) |
| Best Drosophila hit | RNA polymerase III 128kD subunit (0.0) |
| Best Human hit | DNA-directed RNA polymerase III subunit RPC2 isoform 1 (0.0) |
| Best NR hit (blastp) | GF12287 [Drosophila ananassae] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide (RNA polymerase III subunit 2) (RPC2) isoform 1 [Apis mellifera] (0.0) |
| GeneOntology terms | GO:0006383 transcription from RNA polymerase III promoter GO:0005666 DNA-directed RNA polymerase III complex GO:0003899 DNA-directed RNA polymerase activity GO:0005634 nucleus GO:0003677 DNA binding GO:0032549 ribonucleoside binding |
| InterPro families | IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 IPR014724 RNA polymerase Rpb2, OB-fold IPR015712 DNA-directed RNA polymerase, subunit 2 IPR007644 RNA polymerase, beta subunit, protrusion IPR007641 RNA polymerase Rpb2, domain 7 IPR007642 RNA polymerase Rpb2, domain 2 IPR007645 RNA polymerase Rpb2, domain 3 IPR007646 RNA polymerase Rpb2, domain 4 IPR007647 RNA polymerase Rpb2, domain 5 IPR007121 RNA polymerase, beta subunit, conserved site |
| Orthology group | MCL10220 |
Nucleotide sequence:
ATGGGTGAATTAAATAAAAATCACGGTAAAGAGTGGGATTCAGGCAAAAGCCTCAGAGAA
CCTATAAAAACCTTAGAGAAAAAAAAAATTGTTCAAGCAAATGAAAAAGTATTCTGTGAT
TCCGATCCATTATTCTACATAAAGTATTTAAACGCCTATGTCGGAACACCAGATCTGGAA
GAAGGATTTAATGTGACCAAGCCAACAACACCTCATGAATGTCGACTGAGAGACATGACT
TATTCTGCACCAATCACTGTTGACATAGAATATATAAGAGGCAATCAAAGAGTCATTTTT
AAAAATAAGCAATTAATTGGAAGAATGCCTTTAATGCTGAGATCCTCGAATTGTGTTTTA
ACGAATAAATCAGATTTCGAGTTAGCTCAATTAAATGAATGTCCACATGATCCCGGTGGC
TATTTTATTATAAGAGGACAAGAAAAAGTAATTTTAATTCAAGAACAACTCTCTAGGAAT
AGAATGATTGTTGATGAATTTAAAGGTGCCATCCAGTGTCAAGTAACGAGTTCGACCCAT
GAGAAGAAAACTAGGACTATAGTTATTGTTAAAAATGGGAAATATGTTTTGAGGCACAAT
GCTTTATCTGATGATATACCAATATGTGTAGTTTTTAAAGCCATGGGTATATGTAGTGAC
CAAGAAATAATGCAGTTAGTGGGTACAGATGATGCTATTGCAAAAAAAATGGCACCCTGC
ATCATGGACTGCCATAATTTAAAAGTTTTCACACAGAATCAGGCGCTTGCTTATATTGGT
AGCAAATTAAAAGTTAAGAGGTTCCAATCAGCAACATCAAAATTTAGAACTCCGGTGGAC
GAAGCAAGAGATCTGATAGCAACAACCATTTTAGCACATGTGGTAGTAGAAAATTATAAT
TTCTATGTGAAAGCTATTTACTTGGCGATAATGGTGAAAAGAGTCATAGAGGCAGAGACT
AACAAAGCGGCTATAGATGACCCAGACTATTATGGAAATAAGAGGCTGGAACTGGCAGGG
TCACTACTGGCGCTCATGTTTGAAGATCTGTTCAAAAGATTTAATTGGGAATTGAAATCT
ATAGCCGATAAAATAATACCGAGAGTAAAAGCAGCGCCGTTTGATGGAAATTGGACTATC
AAGAGATTCAAAATGGAACGTCATGGCGTCACCCAAGTATTGAGTCGTCTCAGCTATATT
TCGGCTCTCGGTATGATGACGAGAGTTAATTCACAGTTCGAAAAGACCAGGAAGGTTTCT
GGGCCTAGATCGCTGCAACCGTCACAGTGGGGAATGCTCTGTCCTTCTGACACCCCTGAG
GGAGAAGCTTGTGGCTTAGTGAAAAATCTGGCTTTAATGACGCATATTACAACAGAGTGC
TCAGAAGGTCCGATATCAAGGCTAGCTTGTAACGCCGGGGTTGAGGACGTTAGACTACTA
GGAGGTGAAGAAATAAACCATCCAGCTCTCTATATGGTCTTTTTAAACGGTAACATCTTA
GGCGTCACTAGAGAATATAAGAAACTAATAAAAATCTTCAGGATGTTTAGAAGACGAGGT
CTGATCTCTGCGTTTGTGTCTATATATCCTAATCACAATCAAAGAACGGTGTATATATGC
AGTGACGGTGGTAGACTCTGCCGTCCGTATATAATAGTGGAGAAAGGTTTGCCTTTGGTT
CAACAGCATCATATCAATGAGCTCAACAGGGGTATACGAAAGTTTCAAGATTTTCTCAAC
GATGGTCTCATAGAATATTTGGACGTGAATGAAGAAAATGACAGTCATATAGCGACTGTT
GAGACCGAGATAGATCCGTACGTGACAACGCATCTCGAGATAGAGCCGTTCACTATACTT
GGAGTTTGTGCGGGTCTTGTGCCTTATCCCCACCACAATCAGAGCCCCAGGAACACATAC
CAATGTGCTATGGGCAAACAGGCCATGGGTACAATAGGCTATAATCAGAAGAATAGAATA
GACACGCTTATGTATAATTTAGTGTACCCGCAGTGTCCGATGGTTAAAACGAGGACTATA
GAATTGACAAATTTTGATAAGCTGCCGGCCGGGCAGAACGCTACTGTCGCTGTTATGAGT
TACAGTGGCTATGATATAGAAGATGCTTTAATTTTGAACAGAGCATCGATAGACCGTGGT
TACGGACGTTGTTTGGTATACAAAAGTGCCAAAACAATTATGAAGCGATACAGCAATCAG
ACGTCGGACAGAATCCTAGGACCATCAAGAGACGCCAACACTGGAAAAGTTATTAAGGCT
CACGAAGTTCTGGATTCCGATGGCATAGCAGCTCCGGGTGAAATGGTCGAGAACCGTCAA
GTGTTGATAAACAAACAAATGCCTCCCGCCACGCTCAATCCTATAAATCAAGGTCAACCG
CAACAAATAGATTATAAAGACGTGCCAATAACGTACAAAGGGCCAGTCGAATCTTATATA
GAAAAGGTCATGGTGTCCTCCAACTCTGAAGATGCGTTTCTAATAAAAATATTACTGAGG
CAAACTAGAATACCAGAGATCGGTGATAAATTTAGTTCCAGGCATGGACAGAAAGGAGTG
ACAGGTTTGATAGTTCAACAGGAAGACATGCCGTTCAATGATAGAGGGATATGTCCCGAT
ATGATCATGAATCCACATGGTTTCCCCTCGAGAATGACGGTGGGAAAAACTATAGAGCTA
TTGGCGGGAAAAGCTGGACTGATGGAGGGAAAATTTCATTACGGCACAGCATTTGGTGGG
TCGAAAGTTCGCGATGTATGTCAGGAGTTGGAAAAGCATGGCTATAACTACCACGGAAAG
GATATATTCTATTCTGGTATAACAGGAGAACCTTTGGAAGCGTACATTTATTCCGGGCCA
GTTTACTATCAGAAGTTGAAACATATGGTGCAAGACAAAATGCACGCTCGTGCTAGAGGA
CCGAGAGCTGTACTGACGAGACAACCCACTGAAGGAAGGTCGAGGGATGGAGGACTACGA
CTTGGGGAGATGGAACGAGATTGCCTCATTGGTTATGGTGCAAGTATGCTGTTGATGGAA
CGTCTGATGTTAGCGTCTGACGCGTTCAGTGCGGACATTTGCAGTAGTTGCGGCAGGCTG
GCCTCCCGTGCTTGGTGCCACGCCTGCCGGTCCTCGGCCGTCTCGGCGGTCGATATGCCT
TACGCCTGTAAGCTGTTGTTCCAGGAGCTGGCCTCCATGAATATAGTCCCGAGGCTGAAA
TTGAAGAAGTACTCGTGA
Protein sequence:
MGELNKNHGKEWDSGKSLREPIKTLEKKKIVQANEKVFCDSDPLFYIKYLNAYVGTPDLE
EGFNVTKPTTPHECRLRDMTYSAPITVDIEYIRGNQRVIFKNKQLIGRMPLMLRSSNCVL
TNKSDFELAQLNECPHDPGGYFIIRGQEKVILIQEQLSRNRMIVDEFKGAIQCQVTSSTH
EKKTRTIVIVKNGKYVLRHNALSDDIPICVVFKAMGICSDQEIMQLVGTDDAIAKKMAPC
IMDCHNLKVFTQNQALAYIGSKLKVKRFQSATSKFRTPVDEARDLIATTILAHVVVENYN
FYVKAIYLAIMVKRVIEAETNKAAIDDPDYYGNKRLELAGSLLALMFEDLFKRFNWELKS
IADKIIPRVKAAPFDGNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVS
GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTECSEGPISRLACNAGVEDVRLL
GGEEINHPALYMVFLNGNILGVTREYKKLIKIFRMFRRRGLISAFVSIYPNHNQRTVYIC
SDGGRLCRPYIIVEKGLPLVQQHHINELNRGIRKFQDFLNDGLIEYLDVNEENDSHIATV
ETEIDPYVTTHLEIEPFTILGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKNRI
DTLMYNLVYPQCPMVKTRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNRASIDRG
YGRCLVYKSAKTIMKRYSNQTSDRILGPSRDANTGKVIKAHEVLDSDGIAAPGEMVENRQ
VLINKQMPPATLNPINQGQPQQIDYKDVPITYKGPVESYIEKVMVSSNSEDAFLIKILLR
QTRIPEIGDKFSSRHGQKGVTGLIVQQEDMPFNDRGICPDMIMNPHGFPSRMTVGKTIEL
LAGKAGLMEGKFHYGTAFGGSKVRDVCQELEKHGYNYHGKDIFYSGITGEPLEAYIYSGP
VYYQKLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLME
RLMLASDAFSADICSSCGRLASRAWCHACRSSAVSAVDMPYACKLLFQELASMNIVPRLK
LKKYS