| Genomic Position | scaffold4968:+ 254-3760 |
|---|---|
| See gene structure | |
| CDS Length | 1437 |
| Paired RNAseq reads | 474 |
| Single RNAseq reads | 1291 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006411 (0.0) |
| Best Drosophila hit | vacuolar protein sorting 16A (2e-90) |
| Best Human hit | vacuolar protein sorting-associated protein 16 homolog isoform 1 (2e-83) |
| Best NR hit (blastp) | PREDICTED: similar to vacuolar protein sorting vps16 [Tribolium castaneum] (6e-137) |
| Best NR hit (blastx) | vacuolar protein sorting 16 homolog A [Nasonia vitripennis] (3e-134) |
| GeneOntology terms | GO:0005737 cytoplasm GO:0006886 intracellular protein transport GO:0003674 molecular_function |
| InterPro families | IPR006925 Vps16, C-terminal IPR006926 Vps16, N-terminal |
| Orthology group | MCL15756 |
Nucleotide sequence:
CGTCGCAGTCACCGCGCCGATGAGTACATTCGTCTGGTGAAGCCAGATCTTGCCGCTGCG
GTTCAAGACTGTATAGACGCGTCTACCTTCGAATTCGACCCTGATGTCCAGAAAATGTTA
ATTCGAGCGGCACAGTTCGGTAAAGGCTTCATCAGCGATCCGCTTCTCACGGAGCATTAC
GTGGATACATGTCGTTGGCTGAGAGTGCTAAATGCTCTACGAGGGGTCAGAGTGGGGATA
CCCTTGACTTACTTGCAAGCCCAACATCTTGGGAAACATATTCTATTAGATAGATTAATA
TGGCGCCGACTGCACTGTCTCGCTGAACATATAGCGTCCTATCTGCAACTTAAAGACGGA
CAGACAAGGGTTTTATCACACTGGGCCTGTTATAAGGTAACTCAACCCCACTTGGACAAC
GAGAGTGCTGCGAGGGAAATAGGAGAGAAATTGAAAAATATCCCTGGCATATCCTATTCA
ACCATAGCTATGAAAGCTGCGGAGAAAGGTCGAAAAGCGTTAGCCATTAAAATCTTAGAG
TACGAGACCCGCAGTTCTCTCCAGGTGCCCTTATTAGTGTCACTGGGCGAAGGTTCCTCC
GCTCTCATGAAGGCAACCGCCAGCGGTAACACTGACCTCGTTTACACCGTCCTTCTACAT
CTCAAAGAAAAGATGGGCAAACACGAGTTTGAGCTGACGATAGTTAACTTCAAACTGGCT
CATTCTCTGTACATAAAGTACTGCGCGAGTCACAACAGAGAGGCTCTGCGGAAGGTTTAC
GTGCAGGAGGACGATTTCCACGGACAGGCGACCACACACGTCAGGGACGCCATCGAACAG
AGCAATCCCGGAAGTGTAGAGGCATCCCTGATATCCGCCCGGGAATGTTACAGGAAGGGC
AGGAACGATCTCGGGGTTTCGATATGCGAAGAAGCTCGCAAGCTCTGCAAGCAGCAATCA
AGTCTGCAAGAGACGTATGGAGAGAGTTTTGTTGGGCTCTCACTTCACGACACCGTGAAG
AAACTTCTAGAACAGGGGGAAATAAAATTGGCAGATAAACTGAGATCCGAATACAGGATG
CCGGATAAAAGGTACTGGTGGCTGAGAATATTAGTGATGGCGGATAACTATAAATGGGAC
GATTTAGAAAAGTTCTCCAAATCTAAGAAATCGCCGTGCGGCTATGAACCGTTCGTGGAC
GCTTGTCTCAAGTACGGGAAGAACGACGAGGCACTGAAATATCTATCGAAGTGCCGGGAC
GACATCAAAGTCAAATATTACGTCAAGGCCGAGTTCTATGAAGAAGCAGCTCAAGTAGCA
TTCGAACAAAAGGACGAGAGCGCGCTTTTGTTCGTACAAAATAAATGTCCGGTGAGGGAG
TCGACCAAACACGCAAAGATAATGGCGCTGCTCGAACAGCTTGCTGATAAGAAATAA
Protein sequence:
RRSHRADEYIRLVKPDLAAAVQDCIDASTFEFDPDVQKMLIRAAQFGKGFISDPLLTEHY
VDTCRWLRVLNALRGVRVGIPLTYLQAQHLGKHILLDRLIWRRLHCLAEHIASYLQLKDG
QTRVLSHWACYKVTQPHLDNESAAREIGEKLKNIPGISYSTIAMKAAEKGRKALAIKILE
YETRSSLQVPLLVSLGEGSSALMKATASGNTDLVYTVLLHLKEKMGKHEFELTIVNFKLA
HSLYIKYCASHNREALRKVYVQEDDFHGQATTHVRDAIEQSNPGSVEASLISARECYRKG
RNDLGVSICEEARKLCKQQSSLQETYGESFVGLSLHDTVKKLLEQGEIKLADKLRSEYRM
PDKRYWWLRILVMADNYKWDDLEKFSKSKKSPCGYEPFVDACLKYGKNDEALKYLSKCRD
DIKVKYYVKAEFYEEAAQVAFEQKDESALLFVQNKCPVRESTKHAKIMALLEQLADKK