| New model in OGS2.0 | DPOGS211709 |
|---|---|
| Genomic Position | scaffold1455:- 938-4877 |
| See gene structure | |
| CDS Length | 873 |
| Paired RNAseq reads | 60 |
| Single RNAseq reads | 506 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008689 (2e-91) |
| Best Drosophila hit | CG4159, isoform B (3e-61) |
| Best Human hit | tRNA pseudouridine synthase A, mitochondrial isoform 1 (1e-45) |
| Best NR hit (blastp) | GL13924 [Drosophila persimilis] (1e-65) |
| Best NR hit (blastx) | GL13924 [Drosophila persimilis] (9e-59) |
| GeneOntology terms | GO:0004730 pseudouridylate synthase activity GO:0009982 pseudouridine synthase activity GO:0003723 RNA binding GO:0001522 pseudouridine synthesis |
| InterPro families | IPR020103 Pseudouridine synthase, catalytic domain IPR001406 Pseudouridine synthase I, TruA IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain IPR020094 Pseudouridine synthase I, TruA, N-terminal IPR020095 Pseudouridine synthase I, TruA, C-terminal |
| Orthology group | MCL14364 |
Nucleotide sequence:
ATGGACATGCGCAATGAAAAAGCTATTGCTATTAAATTCTCATTAGGTTTTCAAATACGA
ACTATAACAGCAATGGAGGTTGCGCCTGTTGATAAAAAGGACAATTTAGTTCAGGATAAA
AATCGCACTAGGTATAAACGAAGGCGACAATGGGACGATAGAAAAGAAAATGGTGAGAGT
CAAGAGAAAAAAACATGCGATAAACCTTTCGAGAGAATTAAAAGAAAAAAAATGGCCATG
CTACTCGGCTATTGCGGAGTTGATTATTATGGTATGCAAAGGAACCCCGGAGTTCCGACT
ATTGAAGAGGATCTCCTAAAAGCTTTATATGAAGCGAAATATATCACGGAAGATGATTTT
AACAACCAGCAGAATGCACAGTTCCAAAGAAGTTCTAGGACCGACAAGGGTGTCTCAGCG
GCTAGGCAGGTGGTAACATACAGCTACACGCTACCTACTTACGTGTTTGAGTCAAATGTC
GCATCGGAAGATGAGAGGAAAGCATACAGAATCACGTCTCAGAAGATAGATCAAGTAAAT
GAAGTGCTTGGTTACTATAAAGGCACAAAGAGTTACCATAACTTCACCGAGAAGAAACAT
TTCCAAGATCCGTCATCTCTGAGGTACATGATGAGTTTTGTATTGGAGAGGGTTTTCATG
GAGTCGGAAATGGAGTTCGCGGAATTGCTAGTTAAAGGACAAAGTTTCATGTTGCATCAA
ATAAGAAAGATGATAGGGTTGATGATCGCTGTAGTTAGAGGTCATACAGACATTTCTACA
TTGGAGAAGTCGTTTGGCAAAGAAAAGGTCATGATACCAACAGCGCCTGGCCTGGGATTG
GTTCTCGATAAGGTAATAATATATTTTTACTGA
Protein sequence:
MDMRNEKAIAIKFSLGFQIRTITAMEVAPVDKKDNLVQDKNRTRYKRRRQWDDRKENGES
QEKKTCDKPFERIKRKKMAMLLGYCGVDYYGMQRNPGVPTIEEDLLKALYEAKYITEDDF
NNQQNAQFQRSSRTDKGVSAARQVVTYSYTLPTYVFESNVASEDERKAYRITSQKIDQVN
EVLGYYKGTKSYHNFTEKKHFQDPSSLRYMMSFVLERVFMESEMEFAELLVKGQSFMLHQ
IRKMIGLMIAVVRGHTDISTLEKSFGKEKVMIPTAPGLGLVLDKVIIYFY