DPOGS200124 | ||
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Transcript | DPOGS200124-TA | 639 bp |
Protein | DPOGS200124-PA | 212 aa |
Genomic position | DPSCF300044 + 985518-986931 | |
RNAseq coverage | 259x (Rank: top 41%) |
Annotation | ||||
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Heliconius | HMEL015484 | 3e-55 | 48.10% |   |
Bombyx | BGIBMGA002401-TA | 1e-50 | 45.96% |   |
Drosophila | qm-PB | 1e-49 | 44.29% |   |
EBI UniRef50 | UniRef50_O95749 | 5e-46 | 46.67% | Geranylgeranyl pyrophosphate synthase n=73 Tax=Eukaryota RepID=GGPPS_HUMAN |
NCBI RefSeq | XP_001605679.1 | 7e-50 | 47.37% | PREDICTED: similar to ENSANGP00000021639 [Nasonia vitripennis] |
NCBI nr blastp | gi|156554759 | 1e-48 | 47.37% | PREDICTED: geranylgeranyl pyrophosphate synthase-like [Nasonia vitripennis] |
NCBI nr blastx | gi|156554759 | 3e-47 | 47.55% | PREDICTED: geranylgeranyl pyrophosphate synthase-like [Nasonia vitripennis] |
Group | ||||
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Gene Ontology | GO:0008299 | 5.9e-25 | isoprenoid biosynthetic process | |
KEGG pathway | nvi:100122074 | 2e-49 |   | |
  | K00804 (GGPS1) | maps-> | Terpenoid backbone biosynthesis | |
InterPro domain | [8-197] IPR017446 | 1.5e-60 | Polyprenyl synthetase-related | |
[8-195] IPR008949 | 3.3e-41 | Terpenoid synthase | ||
[19-194] IPR000092 | 5.9e-25 | Polyprenyl synthetase | ||
Orthology group |   |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS200124-TA
ATGGACTGTGAAAAAAATCTAGAAAAGGAGCTTCTTGCACCCTACATGCATTTGCTGCAAGTTAAAAGCAAGCAGTTTCGGAATAAAATCGTATTGGCCTTCAATTACTGGTTCAAGGTACCAGACGATCTAGTTCAAAATGCACTCAATGCGATGACAATGACATACAACGCAAGTTTATTGATCGATGATATTCAAGATAATTCAATAAAACGTCGAGGGATTGAAGCAGCTCATTGTATTTATGGAATTCCATTAACTATTAATACAGCAGTTCATGTTTTGGTTCTGGCCCTAAAACAAGAATTAGACCTCGTACCAGCCGCATTGGGTGGTAAAATATTTGTTGACCACGTTCTGGATGTAATTTACGGCCAAGGTGTTGAAATTTACTGGCGAGACAACTTTATGTGTCCGTCTGAAAAAGAGTATAAAGAAATGGTCCAGCAAAAAACTGGTGCCATGCTTTTATATGGAGTGAAATTAATACAAGTTTTAAGTGATGACAAAAGAAATTACGACGATTTTGTGAAACTTCTTGGTTTTTATTTCCAATTGAGAGACGACTACTGCAATTTAAAACAACTAGAAGCATTAGAGGAATACCCTGAAAAGGAAGATGAAAGTGTATGTGTCTGA
>DPOGS200124-PA
MDCEKNLEKELLAPYMHLLQVKSKQFRNKIVLAFNYWFKVPDDLVQNALNAMTMTYNASLLIDDIQDNSIKRRGIEAAHCIYGIPLTINTAVHVLVLALKQELDLVPAALGGKIFVDHVLDVIYGQGVEIYWRDNFMCPSEKEYKEMVQQKTGAMLLYGVKLIQVLSDDKRNYDDFVKLLGFYFQLRDDYCNLKQLEALEEYPEKEDESVCV-