Monarch geneset OGS2.0

DPOGS200179
TranscriptDPOGS200179-TA870 bp
ProteinDPOGS200179-PA289 aa
Genomic positionDPSCF300128 + 652353-653861
RNAseq coverage35x (Rank: top 74%)
Annotation
HeliconiusHMEL0094412e-7451.22% 
BombyxBGIBMGA002778-TA2e-6256.40% 
DrosophilaRad51C-PB2e-1725.07% 
EBI UniRef50UniRef50_UPI00022C90082e-2430.04%UPI00022C9008 related cluster n=1 Tax=unknown RepID=UPI00022C9008
NCBI RefSeqXP_001869974.11e-2127.49%RAD51D [Culex quinquefasciatus]
NCBI nr blastpgi|3800299265e-2934.53%PREDICTED: DNA repair protein RAD51 homolog 4-like [Apis florea]
NCBI nr blastxgi|3800299263e-3033.00%PREDICTED: DNA repair protein RAD51 homolog 4-like [Apis florea]
Group
KEGG pathwaycin:1001819256e-23 
 K10871 (RAD51L3, RAD51D)maps-> Homologous recombination
InterPro domain[78-204] IPR0136321.6e-16DNA recombination and repair protein Rad51, C-terminal
Orthology groupMCL12597 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS200179-TA
ATGTTAAAACTAAAATTAGAAGATCTACTAACAGACAATGAACTTAAGAGTTTGAATCAAAATCGTATCACTACTTTATTAGATTTTCTTCAAGAAGATACTGAGAAATTATCAATACTAACACAGTTGACATTGCCGCAAATTTTGGAAATAAGGAATAATATTTTTAAAAAATATTCCGCAGAACCAATAAATGGAACTGATTTGTATATAACAAGTATAACAAAAAGAAAAAGCATTCAAACGGGAATAAAAGAATTAGATTCCATACTTGATAGAGGTATTCCAAGTGGTATAATAGAAATATGTGGGTTGGCTGGCTCTGGAAAAAGCCAACTTTGTATGCAAATTGCTATAAATTGTGTTAAGGATTCTGACAATACAATTCTGTATATTGACACAAAGGGTGATTTTTCTGCTTTAAGAATCCAAAAGATCTTAGATTTAAATGGATACTCTCATAAGGATATGGCCATTATAATGCTGAAAATAAAAATTGTGAGAGTGTGGACAATTGAAGATTTAATTGAATTAATACAAAAAATCAAAAGTGGTTTGATTGTTGTTGAAAACTTGGCACTTGTTATTATAGACTCCCTCCCATGCCTTGTATTTCAACATTTTGGTGATGATAACAAAATGGATGGAGAATCAACTAGTGTAAACAAAGGAAGCAACTATATAGAGAAGGCCAATCGTTGTTTAGGAAAATACTGGGAGAATATTCCAGCAATACTTTTAATATTAAAGAGAAGTCTAGAATCTATTGACGATAATAGTCTCAGTATAAGAATATCGGCCACAAATTGTAATAATCCTCATGTAGTGAAAACTTGTATGTTGAAAGTTTCTGCTTTGGGTGTGAGATAA

Protein sequence:

>DPOGS200179-PA
MLKLKLEDLLTDNELKSLNQNRITTLLDFLQEDTEKLSILTQLTLPQILEIRNNIFKKYSAEPINGTDLYITSITKRKSIQTGIKELDSILDRGIPSGIIEICGLAGSGKSQLCMQIAINCVKDSDNTILYIDTKGDFSALRIQKILDLNGYSHKDMAIIMLKIKIVRVWTIEDLIELIQKIKSGLIVVENLALVIIDSLPCLVFQHFGDDNKMDGESTSVNKGSNYIEKANRCLGKYWENIPAILLILKRSLESIDDNSLSIRISATNCNNPHVVKTCMLKVSALGVR-