Monarch geneset OGS2.0

DPOGS200357
TranscriptDPOGS200357-TA1851 bp
ProteinDPOGS200357-PA616 aa
Genomic positionDPSCF300026 + 628801-646214
RNAseq coverage317x (Rank: top 36%)
Annotation
HeliconiusHMEL0000268e-15165.24% 
BombyxBGIBMGA005650-TA0.064.10% 
Drosophila% 
EBI UniRef50UniRef50_B9X2560.056.89%Similar to poly(A)-specific ribonuclease, PARN n=3 Tax=Obtectomera RepID=B9X256_BOMMO
NCBI RefSeqNP_001153677.10.056.89%poly(A)-specific ribonuclease [Bombyx mori]
NCBI nr blastpgi|2613359870.059.66%putative poly(A)-specific ribonuclease (parn) [Heliconius melpomene]
NCBI nr blastxgi|2613359870.060.75%putative poly(A)-specific ribonuclease (parn) [Heliconius melpomene]
Group
Gene OntologyGO:00056343.9e-57nucleus
GO:00036763.6e-56nucleic acid binding
GO:00001666e-23nucleotide binding
GO:00045356e-21poly(A)-specific ribonuclease activity
GO:00037236e-21RNA binding
GO:00057376e-21cytoplasm
GO:00064026e-21mRNA catabolic process
GO:00468726e-21metal ion binding
KEGG pathwaynvi:1001232558e-123 
 K01148 (PARN)maps-> RNA degradation
InterPro domain[1-374] IPR0069413.9e-57Ribonuclease CAF1
[1-381] IPR0123373.6e-56Ribonuclease H-like
[417-503] IPR0126776e-23Nucleotide-binding, alpha-beta plait
[423-480] IPR0147896e-21Poly(A)-specific ribonuclease, RNA-binding
Orthology groupMCL15804 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS200357-TA
ATGGAAGTTACACGAAAGAATTTCAAAGAGGTGTTGCCTTTGGTTCGTGATTCAATACAAGCAGCAGACTTTTTAGCTATAGATACTGAATTCACCGGTCTCATGAGCGGCCGGGATGTGTCTATGTTTGATTCCCCGCCAGAATATTACGCGACTTTATTGAATGGGACAGCGGATTTTTTGTTGATTCAATTTGGTTTATGCACTTTTTATTGGGATGAGAAGGAGAAGCAGTATATGAATGATGCTTACAATTTTTATGTTTTCCCGCGCGGTCGACCTGGTCCCGATAGACTCTTTATGTGTCAGAGTTCCAGTTTGGATTTCTTGGCTTCACAGGATTTTGATTTTAATAAGCTCATCCGAGAAGGTATATCATACATGACAGAACCGACAGAAGCCAAGCTCAGAGAGGAGCTGACTGAGAAGCAAAAGAAGTCGGTTAATGAAAAGGATTGTATTCCGATTCCTGAGGAACATAAAGTGCAGATTGACAATATTTGCAAGAAAGTGCGTCATTTCATAGACTTTGAAAATGAAGATGAGATGGAGATAGATCGTTGTAATGCTTTCATCCGACGACTGCTGTTTCAAGAGCTCGGCAAGAGATTTCACAATGAAGTGTTTGTTGAAAGTAAGATGCTCGAGAATAAAAACAGGGTATTGAAAGTTAGCAAGATCAAATGCGGCAGTGACCGCATGAATAGAGACGTGCAGAAGAAAAATGAGGAATGGGAGCAATTTGAAGATGCTGTCGGATTCTCAAGAGTTGCCAGGATGATCAGCCAGTCTGGTAAACTAGTGATCGGACACAACATGTTGCTGGACGTGATGCACACTCTGAACCACTTCTTCCAGCCTCTGCCCACAGATTATAATACCTTTAAGGAATTCACTCATTGCATGTTCCCGAGGATTCTTGACACCAAGTACATGTCAAGCCTGCCACCTATGAGCGATAAAGTGGATTCTAGTGTCTTGACTCACTTGCTGGCGACCATGTCCGAGGCTCCGTTTTCGGTTCCAAAAGCTTTGTGCAAGCCTGGCCGCGGGTACACCCTGGCTGATGACAAGCAGCACGAGGCGGGCTACGACGCCTATATAACCGGCGTTTGTTTCCTCGCTATGATCAACCATTTGGTTCGTATGAGAGGGGATCAGCCGGCCCGCCTCCCCCCCTTGGAGGCCGCCATATGGAAGCCGTTCATGAACAAGCTGTATCTTGCCAAGACCGCACATCAGGACTCTCCATACATAAACCTCACTGGGCCTGATCCTACACCGACTAGAGACCATGTATTTCATGTGACATTTCCGAAGGAGTGGAAGAGAAGCGACATCAGCCAGCTGTTCAGTCCGTTTGGACAAATAACCGTGCAGTTTCTGAACGACACAACAGCGTTCATAGCGTTCTCTCGCCGCGACCTCGCCCGCGGCGTCCCCAGAGCCTTCGCCGGCGACCGCCGTGTTACCATTGTCCCTTATGTCACCTACAAGATCCCCAAACTGTCTCACTCAAATCAGTACCAGTTGGATCGACGCGAGGATGACAAATATAAGAAAGTTTACACACATGAAAGTTCAAACGCGACATCACCAGGTTACGCACGAAAAGAGACTCAGAAGAGTCGAGAGCGATCAAACAGCGTCTCATCTGTACCAGTTGCTAGGAAAAGAACCTCGTCTGGAATATTCAAGATCGAAGATGTTTGTTCTCCGCCAAAGAAAATAGAAAAGGAATTAGCGAATGAAGATAAAAAGGACTTAGACGATGTTAAAAAAATTGAAAACTCGAACAATGTGAGCCGCGTCAATGTTAATGTGTTCAAAGAGAGCGACAGCTGGGATTAA

Protein sequence:

>DPOGS200357-PA
MEVTRKNFKEVLPLVRDSIQAADFLAIDTEFTGLMSGRDVSMFDSPPEYYATLLNGTADFLLIQFGLCTFYWDEKEKQYMNDAYNFYVFPRGRPGPDRLFMCQSSSLDFLASQDFDFNKLIREGISYMTEPTEAKLREELTEKQKKSVNEKDCIPIPEEHKVQIDNICKKVRHFIDFENEDEMEIDRCNAFIRRLLFQELGKRFHNEVFVESKMLENKNRVLKVSKIKCGSDRMNRDVQKKNEEWEQFEDAVGFSRVARMISQSGKLVIGHNMLLDVMHTLNHFFQPLPTDYNTFKEFTHCMFPRILDTKYMSSLPPMSDKVDSSVLTHLLATMSEAPFSVPKALCKPGRGYTLADDKQHEAGYDAYITGVCFLAMINHLVRMRGDQPARLPPLEAAIWKPFMNKLYLAKTAHQDSPYINLTGPDPTPTRDHVFHVTFPKEWKRSDISQLFSPFGQITVQFLNDTTAFIAFSRRDLARGVPRAFAGDRRVTIVPYVTYKIPKLSHSNQYQLDRREDDKYKKVYTHESSNATSPGYARKETQKSRERSNSVSSVPVARKRTSSGIFKIEDVCSPPKKIEKELANEDKKDLDDVKKIENSNNVSRVNVNVFKESDSWD-