DPOGS200413 | ||
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Transcript | DPOGS200413-TA | 294 bp |
Protein | DPOGS200413-PA | 97 aa |
Genomic position | DPSCF300236 - 422439-422732 | |
RNAseq coverage | 91x (Rank: top 62%) |
Annotation | ||||
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Heliconius | HMEL011603 | 5e-46 | 87.76% |   |
Bombyx | BGIBMGA008990-TA | 9e-41 | 83.84% |   |
Drosophila | twi-PA | 6e-24 | 49.58% |   |
EBI UniRef50 | UniRef50_E3VST2 | 2e-38 | 83.84% | Twist protein n=1 Tax=Bombyx mori RepID=E3VST2_BOMMO |
NCBI RefSeq | NP_001155424.1 | 5e-31 | 62.62% | hypothetical protein LOC100160123 [Acyrthosiphon pisum] |
NCBI nr blastp | gi|320202933 | 9e-38 | 83.84% | twist protein [Bombyx mori] |
NCBI nr blastx | gi|320202933 | 1e-37 | 84.85% | twist protein [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0005634 | 2.3e-22 | nucleus | |
GO:0006355 | 2.3e-22 | regulation of transcription, DNA-dependent | ||
KEGG pathway |   | |||
InterPro domain | [1-90] IPR015789 | 5e-44 | Twist | |
[1-53] IPR011598 | 2.3e-22 | Helix-loop-helix DNA-binding | ||
[2-48] IPR001092 | 8.6e-18 | Helix-loop-helix DNA-binding domain | ||
Orthology group |   |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS200413-TA
ATGGCCAATGTAAGAGAGCGTCAACGCACTCAGAGCTTGAACGAAGCTTTTGCGAGTTTAAGACAAATCATTCCATCTCTGCCCAGTGATAAACTTTCTAAAATACAAACCCTGCAGCTAGCGACGCAGTACATAGAATTTTTATATCAGATTTTATCCAACAGCGACTCCTCTTCGAACAGTGAAGTCACCGACGCCAACACTGAACACGGCAAATACTTAGCACAGGATAAACTAAGTTACGCTTTTTCAGTGTGGCGTATGGAAGGCGAATTCACCAACGGACAAACGTGA
>DPOGS200413-PA
MANVRERQRTQSLNEAFASLRQIIPSLPSDKLSKIQTLQLATQYIEFLYQILSNSDSSSNSEVTDANTEHGKYLAQDKLSYAFSVWRMEGEFTNGQT-