Monarch geneset OGS2.0

DPOGS200427
TranscriptDPOGS200427-TA1968 bp
ProteinDPOGS200427-PA655 aa
Genomic positionDPSCF300236 - 43770-52300
RNAseq coverage3529x (Rank: top 3%)
Annotation
HeliconiusHMEL0025030.093.90% 
BombyxBGIBMGA009000-TA0.092.06% 
DrosophilaSdhA-PB0.072.98% 
EBI UniRef50UniRef50_Q945230.072.98%Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1313 Tax=root RepID=DHSA_DROME
NCBI RefSeqXP_001995110.10.074.06%GH22974 [Drosophila grimshawi]
NCBI nr blastpgi|1950564970.074.06%GH22974 [Drosophila grimshawi]
NCBI nr blastxgi|1582898910.074.50%AGAP010429-PA [Anopheles gambiae str. PEST]
Group
Gene OntologyGO:00166276.3e-290oxidoreductase activity, acting on the CH-CH group of donors
GO:00060996.3e-290tricarboxylic acid cycle
GO:00506606.3e-290flavin adenine dinucleotide binding
GO:00551146.3e-290oxidation-reduction process
GO:00229003.2e-225electron transport chain
GO:00090559.1e-122electron carrier activity
GO:00164919.1e-122oxidoreductase activity
KEGG pathwaydgr:Dgri_GH229740.0 
 K00234 (SDHA, SDH1)maps-> Huntington's disease
    Citrate cycle (TCA cycle)
    Oxidative phosphorylation
    Alzheimer's disease
    Parkinson's disease
InterPro domain[51-655] IPR0112816.3e-290Succinate dehydrogenase, flavoprotein subunit
[54-598] IPR0140063.2e-225Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
[54-448] IPR0039539.1e-122Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
[494-655] IPR0159398.7e-49Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal
[503-655] IPR0041121.1e-42Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
Orthology groupMCL10317 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS200427-TA
ATGAGTGCATTGATTAAGGCCGCAGTTTCCCGCAGCCCGTCATGTTTGGCGACATATTTAAACAGGAACCTCCACCTAACAGTGGGAGCGTCAGCATCGAAAGACGCTTCTGTGAATTCGAACGCAAGTAAATCGTACACGGTTATCGATCACAAGCACGATGCCTTAGTTATTGGGGCTGGAGGAGCTGGTTTAAGAGCCGCCTTTGGTTTGGTACAGGAGGGATTCAAAACTGCTGTTGTAACAAAGCTATTCCCTACCAGATCCCATACTGTTGCTGCACAGGGAGGCATCAATGCTGCATTAGGTAATATGGAAGAAGATAATTGGTTGTGGCACATGTATGATACTGTCAAGGGATCTGACTGGCTCGGAGACCAGGACGCCATCCATTACATGACGAAGGAAGCACCTCATGCTGTTATTGAGTTAGACAACTATGGCATGCCTTTTTCGCGCACACCAGAAGGTAGAATATACCAGAGGGCCTTCGGTGGTCAGTCACTCAAGTTTGGTAAAGGGGGTCAAGCTCATAGATGCTGCGCTGTAGCCGACAGAACGGGCCATTCACTTCTCCATACACTCTACGGCCAATCCCTCCGATATGACTGTGAATACTTCATTGAGTATTTTGCTCTGGATCTCCTGATGGAAGACGGAGTCTGCAAGGGATGTATCGCTATTAACCTTGAGGACGGAACTTTACATAGGTTCCAAGCTAAGAACACTATCCTCGCCACGGGTGGCACTGGGCGGTCGTACTTCAGCTGCACCTCGGCTCACACGTGCACTGGGGACGGAACAGCCATGGCGGCTCGAGCTGGTCTCCAGAACGAGGACATGGAGTTTGTGCAGTTCCACCCCACCGGTATCTACGGAGCTGGTTGTCTAATGACCGAAGGTTGTCGTGGTGAAGGCGGTTTCCTTGTGAACGCTAAGGGCGAGCGGTTCATGGAAAGATATGCACCGGTCGCCAAAGACCTCGCCAGCAGGGACGTGGTCTCCAGAGCCATGACCGTGGAGATCATGGAAGGTCGCGGCTGCGGTCCAGAAAAGGACCACGTCCACCTTCAGCTGCACCATCTGCCTCCGGAACAGCTGAAGCAGCGTCTCCCCGGCATCTCGGAGACGGCCATGATCTTCGCCGGAGTCGACGTCACCAAGGAACCCATACCTGTGTTGCCCACCGTACACTACAACATGGGCGGAACGCCGACCAACTTCAGGGGAGAGGTTATAACGCATTACAACGGCGAAGACCGCGTGGTCCCTGGTCTACTGGCAGCTGGTGAGGCTTCCTGTGCCTCCGTCCATGGTGCAAACAGATTGGGGGCGAACTCCCTCCTTGATATCGTTGTGTTTGGAAGAGCCTGCGCCCTCACAGTCGCAGACACCAGCCGCCCTGGGGACAAGCAGGAGCCGCTCAAAGACACCACTGGTCAGGAAAGTATCGGTAATCTGGACAAGTTAAGGTACGCGAACGGCAGCATCTCCACCGCGGAGCTGCGCCTGCGCATGCAGAAATGTATGCAGAAGAACGCGGCCGTGTTCAGACAGAAGAGCACACTAGAAGAAGGTCAACGCCAGATCCACGAGGTGTACAAGCAGATGGCGGACGTGAAGGTTTCAGATCGCTCACTGATCTGGAACAGCGACCTGGTGGAGACCCTGGAGCTGCAGAACCTGCTCATCAACGCGGTCCAGATCGTGGAGGGCGCGCTGGCCAGGGAGGAGTCCCGAGGAGCGCACGCCCGGGAGGACTTCAAGACCAGGAGGGACGAGTACGACTACTCCAAGCCACTCGAGGGACAGACAAAATTGCCGTTCGAGAAGCACTGGCGCAAGCATACATTGTCGGAGACCAACGCGGCCACCGGCGAGACCAAACTCAGCTACAGACCGGTCATAGACCACACGCTCGACCAGGCCGAGTGCCAGACCGTGCCGCCCGTCATACGCACATACTAG

Protein sequence:

>DPOGS200427-PA
MSALIKAAVSRSPSCLATYLNRNLHLTVGASASKDASVNSNASKSYTVIDHKHDALVIGAGGAGLRAAFGLVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDNWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNYGMPFSRTPEGRIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCEYFIEYFALDLLMEDGVCKGCIAINLEDGTLHRFQAKNTILATGGTGRSYFSCTSAHTCTGDGTAMAARAGLQNEDMEFVQFHPTGIYGAGCLMTEGCRGEGGFLVNAKGERFMERYAPVAKDLASRDVVSRAMTVEIMEGRGCGPEKDHVHLQLHHLPPEQLKQRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGTPTNFRGEVITHYNGEDRVVPGLLAAGEASCASVHGANRLGANSLLDIVVFGRACALTVADTSRPGDKQEPLKDTTGQESIGNLDKLRYANGSISTAELRLRMQKCMQKNAAVFRQKSTLEEGQRQIHEVYKQMADVKVSDRSLIWNSDLVETLELQNLLINAVQIVEGALAREESRGAHAREDFKTRRDEYDYSKPLEGQTKLPFEKHWRKHTLSETNAATGETKLSYRPVIDHTLDQAECQTVPPVIRTY-