| DPOGS200441 | ||
|---|---|---|
| Transcript | DPOGS200441-TA | 351 bp |
| Protein | DPOGS200441-PA | 116 aa |
| Genomic position | DPSCF300236 + 447611-448433 | |
| RNAseq coverage | 524x (Rank: top 24%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL002999 | 3e-58 | 92.24% | |
| Bombyx | BGIBMGA008899-TA | 3e-57 | 92.31% | |
| Drosophila | LSm7-PA | 3e-43 | 79.61% | |
| EBI UniRef50 | UniRef50_Q9UK45 | 3e-41 | 79.80% | U6 snRNA-associated Sm-like protein LSm7 n=37 Tax=Opisthokonta RepID=LSM7_HUMAN |
| NCBI RefSeq | NP_001040136.1 | 1e-55 | 92.31% | U6 snRNA-associated Sm-like protein [Bombyx mori] |
| NCBI nr blastp | gi|114050803 | 3e-54 | 92.31% | U6 snRNA-associated Sm-like protein [Bombyx mori] |
| NCBI nr blastx | gi|114050803 | 1e-53 | 92.31% | U6 snRNA-associated Sm-like protein [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| KEGG pathway | tca:658224 | 3e-48 | ||
| K12626 (LSM7) | maps-> | RNA degradation | ||
| Spliceosome | ||||
| InterPro domain | [1-117] IPR017132 | 1.8e-72 | U6 snRNA-associated Sm-like protein LSm7 | |
| [28-101] IPR006649 | 9.3e-21 | Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type | ||
| [29-101] IPR001163 | 3e-17 | Like-Sm ribonucleoprotein (LSM) domain | ||
| [22-107] IPR010920 | 5.2e-17 | Like-Sm ribonucleoprotein (LSM)-related domain | ||
| Orthology group | MCL12186 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS200441-TA
ATGGCTTCAAAAGAAGGAGATAAAACTAAATCAAGTCAAGGTGGTGGCGATAATAAAGAAAAACGTAGAAAAGAATCTATTTTAGATTTAAGTAAATATCTTGAGAAATGTATTCGTGTTAAATTCGCTGGCGGACGGGAAGCGGCGGGAATTCTTAAAGGATACGACCCTCTATTAAACTTAGTGTTAGACAATACAACAGAATTTCTTAGAGATCCAGATGACCCATATAAGCTTGTGGACGACACAAGGGCATTAGGGCTTGTGGTGTGCCGAGGCACATCTGTAGTTTTAATCTGTCCAATGGATGGAATGGAGGCAATACCAAACCCTTTTATAACACAAGAGTGA
>DPOGS200441-PA
MASKEGDKTKSSQGGGDNKEKRRKESILDLSKYLEKCIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLVDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFITQE-