| DPOGS200511 | ||
|---|---|---|
| Transcript | DPOGS200511-TA | 717 bp |
| Protein | DPOGS200511-PA | 238 aa |
| Genomic position | DPSCF300450 + 34345-38313 | |
| RNAseq coverage | 3x (Rank: top 90%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017624 | 3e-120 | 93.10% | |
| Bombyx | BGIBMGA009132-TA | 1e-113 | 85.78% | |
| Drosophila | betaTub85D-PA | 8e-111 | 84.48% | |
| EBI UniRef50 | UniRef50_Q13509 | 6e-110 | 84.48% | Tubulin beta-3 chain n=160 Tax=Eukaryota RepID=TBB3_HUMAN |
| NCBI RefSeq | XP_002161860.1 | 6e-113 | 87.07% | PREDICTED: similar to beta-tubulin [Hydra magnipapillata] |
| NCBI nr blastp | gi|10242160 | 2e-112 | 87.50% | beta tubulin [Notothenia coriiceps] |
| NCBI nr blastx | gi|549053 | 6e-119 | 88.31% | beta-tubulin 1 [Notothenia neglecta] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005874 | 6e-178 | microtubule | |
| GO:0007017 | 6e-178 | microtubule-based process | ||
| GO:0005525 | 6e-178 | GTP binding | ||
| GO:0051258 | 3e-116 | protein polymerization | ||
| GO:0043234 | 3e-116 | protein complex | ||
| GO:0007018 | 3.2e-37 | microtubule-based movement | ||
| GO:0005198 | 3.2e-37 | structural molecule activity | ||
| KEGG pathway | xla:379359 | 8e-113 | ||
| K07375 (TUBB) | maps-> | Pathogenic Escherichia coli infection | ||
| Gap junction | ||||
| Phagosome | ||||
| InterPro domain | [1-231] IPR000217 | 6e-178 | Tubulin | |
| [1-231] IPR003008 | 3e-116 | Tubulin/FtsZ, GTPase domain | ||
| [41-58] IPR002453 | 3.2e-37 | Beta tubulin | ||
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS200511-TA
ATGCGTGAAATAGTTCATCTCCAGGCGGGACAGTGCGGCAATCAGATCGGCTCTAAGTTCTGGGAGATAATATCTGACGAGCACGGCATCGACCCCACCGGCGTGTACCGAGGCAACAGCGACTTACAGCTGGACAGAATCCAGGTGTATTACAATGAAGCAGCAGATGGTAACCGTTACGTGCCGCGTGCGGTGCTCGTGGACTTGGAGCCGGGCACCATGGACTCTATCAGGGGCTCGAGTCACGGGAGACTGTTCCGACCTGATAACTACGTGTTTGGTCAGAGCGGAGCCGGAAACAACTGGGCGAAGGGCCACTATACGGAGGGCGCGGAATTGATTGACTCTGTCATGGACGTGGTGAGGAAGGAGGCGGAGCCTTGCGACTGTTTACAAGGTTTCCAGTTAACTCACTCGCTTGGCGGCGGCACGGGCTCGGGGCTCGGCACGCTGCTGCTCAGCAAACTACGAGAGGAGTACCCGGACAGGATCGTCAATACGTTCAGTGTCACGCCTTCACCTAAGGTGTCTGACACAGTGGTGGAGCCTTACAACGCGACGCTGTCCGTCCATCAGCTCGTGGAGAACACGGACGAGACCTTCTGCATCGACAACGAGGCGCTCTACGACATCTGCTTCCGGACCCTGAGACTTGCAACACCCACGTATGGTGACCTCAACCATTTGGTGTCGGTGAGATGTATTAATGCTCACTAA
>DPOGS200511-PA
MREIVHLQAGQCGNQIGSKFWEIISDEHGIDPTGVYRGNSDLQLDRIQVYYNEAADGNRYVPRAVLVDLEPGTMDSIRGSSHGRLFRPDNYVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAEPCDCLQGFQLTHSLGGGTGSGLGTLLLSKLREEYPDRIVNTFSVTPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLRLATPTYGDLNHLVSVRCINAH-