DPOGS200571 | ||
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Transcript | DPOGS200571-TA | 462 bp |
Protein | DPOGS200571-PA | 153 aa |
Genomic position | DPSCF300119 + 475672-476227 | |
RNAseq coverage | 269x (Rank: top 40%) |
Annotation | ||||
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Heliconius | % |   | ||
Bombyx | BGIBMGA009360-TA | 7e-58 | 79.85% |   |
Drosophila | CG31957-PA | 2e-35 | 53.38% |   |
EBI UniRef50 | UniRef50_Q1HQA3 | 8e-54 | 78.36% | Translation initiation factor 1a n=4 Tax=Endopterygota RepID=Q1HQA3_BOMMO |
NCBI RefSeq | NP_001040352.1 | 2e-54 | 78.36% | translation initiation factor 1a [Bombyx mori] |
NCBI nr blastp | gi|114050725 | 3e-53 | 78.36% | translation initiation factor 1a [Bombyx mori] |
NCBI nr blastx | gi|114050725 | 3e-59 | 74.34% | translation initiation factor 1a [Bombyx mori] |
Group | ||||
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Gene Ontology | GO:0006413 | 1.9e-29 | translational initiation | |
GO:0003743 | 1.9e-29 | translation initiation factor activity | ||
GO:0003723 | 4.7e-23 | RNA binding | ||
KEGG pathway |   | |||
InterPro domain | [1-153] IPR016027 | 6.3e-35 | Nucleic acid-binding, OB-fold-like | |
[1-130] IPR012340 | 5.2e-32 | Nucleic acid-binding, OB-fold | ||
[21-104] IPR001253 | 1.9e-29 | Translation initiation factor 1A (eIF-1A) | ||
[24-87] IPR006196 | 4.7e-23 | RNA-binding domain, S1, IF1 type | ||
Orthology group | MCL15912 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS200571-TA
ATGTCGAAAGTAACAAAGAGGAAACATGTGATGAACGAAACATTATGGGATGACTATGAGTTGCCTAAAGAAAATCAAAGTATAGTTAAAGTTTTGAAAAGTAGAGGAAATAATCTTCATGAGATACAAACGCCTACTGGAGAGGAATACTTGGTATCTATGCCGGGAAAATTTCGAAAAAACATTTGGGTAAAACGAGGCGATTACATTCTAGTGGAACCAATCGAGGAAGGGGATAAAGTGAAAGCGGAAATAGTTAAAATAATGAATAAGGGCTCTATAAAATATTACAAGGAAAATAATGTGTGGCCTAAGGAATTTGATGATAACAAAAAGGAAGAGCTCAAGGAAAATGATGATGACTTATTTGTAAACACAAACAGAGCTCATATGAAAAGTTATTCCAGTGATATAGACAGCAGTGACTCTAGTGACAGTGACAGTCAAAGTGATGATAAATAA
>DPOGS200571-PA
MSKVTKRKHVMNETLWDDYELPKENQSIVKVLKSRGNNLHEIQTPTGEEYLVSMPGKFRKNIWVKRGDYILVEPIEEGDKVKAEIVKIMNKGSIKYYKENNVWPKEFDDNKKEELKENDDDLFVNTNRAHMKSYSSDIDSSDSSDSDSQSDDK-