DPOGS200811 | ||
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Transcript | DPOGS200811-TA | 714 bp |
Protein | DPOGS200811-PA | 237 aa |
Genomic position | DPSCF300249 - 2448-8315 | |
RNAseq coverage | 51x (Rank: top 70%) |
Annotation | ||||
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Heliconius | HMEL011919 | 1e-100 | 78.09% |   |
Bombyx | BGIBMGA005390-TA | 4e-94 | 76.96% |   |
Drosophila | h-PB | 1e-39 | 46.73% |   |
EBI UniRef50 | UniRef50_Q8T306 | 3e-54 | 54.32% | Helix-loop-helix transcription factor n=1 Tax=Tribolium castaneum RepID=Q8T306_TRICA |
NCBI RefSeq | NP_001107765.1 | 6e-55 | 54.32% | hairy [Tribolium castaneum] |
NCBI nr blastp | gi|270014144 | 9e-54 | 54.32% | hypothetical protein TcasGA2_TC012851 [Tribolium castaneum] |
NCBI nr blastx | gi|270014144 | 4e-53 | 53.88% | hypothetical protein TcasGA2_TC012851 [Tribolium castaneum] |
Group | ||||
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Gene Ontology | GO:0006355 | 7.9e-15 | regulation of transcription, DNA-dependent | |
GO:0005634 | 4.7e-14 | nucleus | ||
GO:0003677 | 8.5e-12 | DNA binding | ||
KEGG pathway |   | |||
InterPro domain | [20-76] IPR001092 | 7.9e-15 | Helix-loop-helix DNA-binding domain | |
[18-78] IPR011598 | 4.7e-14 | Helix-loop-helix DNA-binding | ||
[85-121] IPR003650 | 8.5e-12 | Orange | ||
[85-125] IPR018352 | 2.3e-08 | Orange subgroup | ||
Orthology group | MCL14639 |   | Insect specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS200811-TA
ATGGTGACTGTAGCGAGCCCGCATACAGACATGCAGGAGGCGAAGAAGACAGATAACAGACGGAGTAACAAGCCTATTATGGAGAAGAGAAGACGAGCGCGTATTAACAACTGCTTGAATGAATTGAAGGCATTAATACTTGATGCAATGAAAAAAGACCCGGCGCGACATTCAAAATTAGAGAAGGCAGATATTTTGGAGATGACTGTCAAACATTTGGAGGGTCTGCGATCTGAAGGCGCCGGTTCCCCCGACCGCTTCAAGGCTGGTTATAGACATTGTTTGTCTGAAGTGTCCAAGTTCCCCGGCCTGGATACAGGTTTGAAGCGCCGCCTCGTGAAGCATTTGGAGGGTTGTGTCAACGTGAACAGACCGCTCACAGCGCCGACCCCGCCATCAGACGTCGATGATACATCACACTCTACAATATTCATATCAGCTGGACCGGGTTCTGGGGTGCGATTGGTGCCAACGAGATTATCTAATGGGGATATCGCTTTGGTTCTACCAGCTGGAGTGAGCGCTAGTACGCTGGCAGCTGTTCCGACGTTACTACCGCTATCACCTCGCGAGGTATCCTCTGCGTCATCGGAGCCTCGATGTTTGTCACCCGCCAGTTCTGGTTGGGGCAGCCCTCCGCCATCGGAGGAACAAGCGCCTCTCGCGTTGGTCACCAGAAGACAGCCAGAGGAGAAACCGTGGCGTCCGTGGTGA
>DPOGS200811-PA
MVTVASPHTDMQEAKKTDNRRSNKPIMEKRRRARINNCLNELKALILDAMKKDPARHSKLEKADILEMTVKHLEGLRSEGAGSPDRFKAGYRHCLSEVSKFPGLDTGLKRRLVKHLEGCVNVNRPLTAPTPPSDVDDTSHSTIFISAGPGSGVRLVPTRLSNGDIALVLPAGVSASTLAAVPTLLPLSPREVSSASSEPRCLSPASSGWGSPPPSEEQAPLALVTRRQPEEKPWRPW-