DPOGS201034 | ||
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Transcript | DPOGS201034-TA | 636 bp |
Protein | DPOGS201034-PA | 211 aa |
Genomic position | DPSCF300147 + 525518-526153 | |
RNAseq coverage | 702x (Rank: top 18%) |
Annotation | ||||
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Heliconius | HMEL021528 | 5e-112 | 91.47% |   |
Bombyx | BGIBMGA009114-TA | 3e-107 | 88.63% |   |
Drosophila | CG12343-PA | 8e-79 | 66.19% |   |
EBI UniRef50 | UniRef50_B0WLX7 | 7e-79 | 66.98% | Pre-mRNA-splicing factor Syf2 n=5 Tax=Culicidae RepID=B0WLX7_CULQU |
NCBI RefSeq | XP_968841.1 | 1e-87 | 74.88% | PREDICTED: similar to AGAP010515-PA [Tribolium castaneum] |
NCBI nr blastp | gi|91088087 | 2e-86 | 74.88% | PREDICTED: similar to AGAP010515-PA [Tribolium castaneum] |
NCBI nr blastx | gi|91088087 | 5e-92 | 74.88% | PREDICTED: similar to AGAP010515-PA [Tribolium castaneum] |
Group | ||||
---|---|---|---|---|
KEGG pathway | tca:657280 | 3e-87 |   | |
  | K12868 (SYF2) | maps-> | Spliceosome | |
InterPro domain | [1-211] IPR013260 | 2.3e-110 | mRNA splicing factor SYF2 | |
Orthology group | MCL12516 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS201034-TA
ATGAAAAGGTTGCGTTCATTACACTCAGCTAGGAACGAAGCTCGAACACATAATCACCAGGAAGTAGTAGCAGAAGAAGCTCGAAATAAACTTCCCGTCAATTATGAAGCTAAAAAACGACAAGCGGAATGGCTTTTAGAAGATCAAAACAAGCGGGAGGAAGCGACGAAACAAGGCAAGGATTACGATAGAGTCAAACTACTTAACATATCTGCGGTTGAGGCAGAGAGATTGGAAAGAAAGAAGAAGAAGAAAAATCCAGACCAAGGGTTTTCCAGTTACGAACAGGCCACTGTCCGACAATACAACCGTTTGATAAAGAACATGCCGACCATGGATAACGAGGAATACGAAAAACAGAAACAGAAATACGGTGAAGCATTTTACGGAGGGCCCAATGTTATTATACATGGCATGCACGAGGACCGCAAGGAAGCAGTCGATAAAATGGTGAACGATTTAGAGGGACAGATAGCCAAGAGATCGAAATACTCGAGAAGACGTATTCATAATGATGATGCAGATATCGACTACATCAATGAACGTAATGCCAAGTTCAATAAGAAATTAGAGAGATTCTATGGAGAACACACAGCTGAAATCAAACAGAACCTCGAAAGGGGTACTGCAATATAA
>DPOGS201034-PA
MKRLRSLHSARNEARTHNHQEVVAEEARNKLPVNYEAKKRQAEWLLEDQNKREEATKQGKDYDRVKLLNISAVEAERLERKKKKKNPDQGFSSYEQATVRQYNRLIKNMPTMDNEEYEKQKQKYGEAFYGGPNVIIHGMHEDRKEAVDKMVNDLEGQIAKRSKYSRRRIHNDDADIDYINERNAKFNKKLERFYGEHTAEIKQNLERGTAI-