| DPOGS201117 | ||
|---|---|---|
| Transcript | DPOGS201117-TA | 744 bp |
| Protein | DPOGS201117-PA | 247 aa |
| Genomic position | DPSCF300137 + 209227-214607 | |
| RNAseq coverage | 66x (Rank: top 67%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017983 | 2e-56 | 65.22% | |
| Bombyx | BGIBMGA013666-TA | 2e-58 | 74.63% | |
| Drosophila | CG10664-PA | 7e-42 | 47.13% | |
| EBI UniRef50 | UniRef50_A6N9X3 | 2e-41 | 50.96% | Cytochrome c oxidase polyprotein IV n=6 Tax=Arthropoda RepID=A6N9X3_ORNPR |
| NCBI RefSeq | XP_314839.4 | 7e-49 | 56.85% | AGAP008727-PA [Anopheles gambiae str. PEST] |
| NCBI nr blastp | gi|354549511 | 4e-48 | 58.50% | cytochrome c oxidase polypeptide IV [Antheraea yamamai] |
| NCBI nr blastx | gi|354549511 | 1e-47 | 58.90% | cytochrome c oxidase polypeptide IV [Antheraea yamamai] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0004129 | 5.6e-55 | cytochrome-c oxidase activity | |
| KEGG pathway | aga:AgaP_AGAP008727 | 2e-48 | ||
| K02263 (COX4) | maps-> | Huntington's disease | ||
| Oxidative phosphorylation | ||||
| Alzheimer's disease | ||||
| Cardiac muscle contraction | ||||
| Parkinson's disease | ||||
| InterPro domain | [30-171] IPR004203 | 5.6e-55 | Cytochrome c oxidase subunit IV | |
| [44-57] IPR013288 | 2.1e-15 | Cytochrome c oxidase subunit IV, subgroup | ||
| Orthology group | MCL26110 | Lepidoptera specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS201117-TA
ATGAATCCCGTGTTAAAATTCCCCTACATATTTAAACCAAATGTCCAAAACATCAGAACGACTTACTGGTATTGTAGGACAGGTTACAGAGATGTAGTGGGCCACGGTGTTAATGGTATAGCCGGCTACAAAGATGATTGCCATTTTCCATTCCCAGCTGTGAGGTTTAAGGAGAACACTCAGGACATATGTGCCCTTCGCGAGAAGGAACGTTGTGATTGGCGGATGCTCTGCTGTGAGGAGAAGAAGGCACTGTACCGCGCTTCCTTCTGCCAGACCTTCGCGGAGTTCCAGGCGCCAACTGGCCAATGGAAGTTCATCATGGGATGGGTGTTCGTCGTTACTTCCTTCACATTCTGGGCAGCCATGTTTTATCATCATTACGTGTATGAGCCGTTGCCAAGTACATTCTCCAAGGAGTCCCAGAAGGCTCAACTGCGCCGCATGCTGGAGCTACGTGTCAATCCCATAGACGGAATTTCATCCCTCTGGGACTACGACAACGACAAATGGCTGGTAGCTATTGTCCTAGCCTTTATTGGCATGTCCTTGGCCAATCCCGTCCCATCTGGTTTAGGGGGTCTGATGGAACACGAGCAGATAATGAGAAGTATGAACGATAAAGAGTGGCAGTATGAAGGAATACCTATAGAGTTGCCGCTCAGAAGAAGCGAAACTGTAAAGAAAACGACTCCCAAAAAAAAAATTACCAGTAAGGGTTTTGTTTATGTAAGCTTTGAGTGA
>DPOGS201117-PA
MNPVLKFPYIFKPNVQNIRTTYWYCRTGYRDVVGHGVNGIAGYKDDCHFPFPAVRFKENTQDICALREKERCDWRMLCCEEKKALYRASFCQTFAEFQAPTGQWKFIMGWVFVVTSFTFWAAMFYHHYVYEPLPSTFSKESQKAQLRRMLELRVNPIDGISSLWDYDNDKWLVAIVLAFIGMSLANPVPSGLGGLMEHEQIMRSMNDKEWQYEGIPIELPLRRSETVKKTTPKKKITSKGFVYVSFE-