DPOGS201327 | ||
---|---|---|
Transcript | DPOGS201327-TA | 906 bp |
Protein | DPOGS201327-PA | 301 aa |
Genomic position | DPSCF300176 + 562647-565952 | |
RNAseq coverage | 758x (Rank: top 17%) |
Annotation | ||||
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Heliconius | HMEL012402 | 9e-125 | 85.38% |   |
Bombyx | BGIBMGA003121-TA | 3e-138 | 80.33% |   |
Drosophila | Trf2-PF | 2e-79 | 64.71% |   |
EBI UniRef50 | UniRef50_Q16II1 | 1e-90 | 71.24% | Tata-box binding protein n=4 Tax=Neoptera RepID=Q16II1_AEDAE |
NCBI RefSeq | XP_001663841.1 | 3e-91 | 71.24% | tata-box binding protein [Aedes aegypti] |
NCBI nr blastp | gi|157136872 | 5e-90 | 71.24% | tata-box binding protein [Aedes aegypti] |
NCBI nr blastx | gi|157136872 | 4e-85 | 71.24% | tata-box binding protein [Aedes aegypti] |
Group | ||||
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Gene Ontology | GO:0003677 | 2.9e-124 | DNA binding | |
GO:0006355 | 2.9e-124 | regulation of transcription, DNA-dependent | ||
GO:0006367 | 2.9e-124 | transcription initiation from RNA polymerase II promoter | ||
GO:0005488 | 9.2e-25 | binding | ||
KEGG pathway | ame:412919 | 2e-86 |   | |
  | K03120 (TBP, tbp) | maps-> | Huntington's disease | |
  |   |   | Basal transcription factors | |
InterPro domain | [66-267] IPR000814 | 2.9e-124 | TATA-box binding protein | |
[66-267] IPR015445 | 2.9e-124 | TATA-Box binding protein-like | ||
[69-168] IPR012294 | 6.2e-30 | Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal | ||
[71-157] IPR012295 | 9.2e-25 | Beta2-adaptin/TATA-box binding, C-terminal | ||
Orthology group | MCL12628 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS201327-TA
ATGGCTACACTCATCCAAGAGAATGGTATGAAGTTGAGCAAAGGAACCCATGGTGTAGTCGTTAACCATGGCATGACGACGCACGGTGTCCCAAATCACATGGTGCCAGACCATGAATACTGTGAATCGGGTCAGGCCGAGCAACCCGCACAACAGTGCCTCGACGCGGAGAGCGAGCCGCATCAGCCGCCCGTCGAGGAGGAGGAGGAAACCCCAGAAATTGACATAATGATAAACAATGTTGTGTGCAGTTTTAGTGTTAAGTGTCACCTGAACCTGAGACAGATCGCTTTAAACGGTGTTAATGTTGAGTTCAGACGGGAGAACGGAATGGTTACTATGAAACTCCGGCGTCCATACACCACGGCCTCTATATGGTCCTCTGGTCGGGTCACGTGCACGGGCGCCACTAGCGAGGATCAAGCTAAAGTGGCCGCCCGCCGCTACGCACGTGCCCTACAGAAGTTGGGCTTCCAAGTACGCTTTCGCAACTTTCGTGTTGTAAACGTACTCGGAACTTGTAGGATGCCCTTTGGCATTCGAATTATAGCATTCTCAAAGAAATACAAAGAAGCAGACTATGAGCCTGAACTTCATCCCGGGGTAACATACAAGTTGTACAATCCCAAGGCGACTCTCAAGATATTTTCCACCGGTGGTGTGACAATAACTGCTCGAAGCGTTAGCGATGTCCAGTCGGCCGTAGAGCGCATCTTCCCGCTGGTGTACGAGTTCCGTAAGCCTCACTCGCCCGCCGATGAGGAGAAGCTGCGTCAGAGGCGGGCGGCGCGATCGCGGGGCGCCGGCCCACAACCCGCAGAGGAGCGGCCCCTTGAACAAGCTGCACCACAGACTGACGACCCCATGCACCTGGTCACACTGTCCGACGACGACGCCTGGGAGTGA
>DPOGS201327-PA
MATLIQENGMKLSKGTHGVVVNHGMTTHGVPNHMVPDHEYCESGQAEQPAQQCLDAESEPHQPPVEEEEETPEIDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTCTGATSEDQAKVAARRYARALQKLGFQVRFRNFRVVNVLGTCRMPFGIRIIAFSKKYKEADYEPELHPGVTYKLYNPKATLKIFSTGGVTITARSVSDVQSAVERIFPLVYEFRKPHSPADEEKLRQRRAARSRGAGPQPAEERPLEQAAPQTDDPMHLVTLSDDDAWE-