Monarch geneset OGS2.0

DPOGS201608
TranscriptDPOGS201608-TA567 bp
ProteinDPOGS201608-PA188 aa
Genomic positionDPSCF300152 + 360382-361132
RNAseq coverage645x (Rank: top 20%)
Annotation
HeliconiusHMEL0081043e-9186.31% 
BombyxBGIBMGA012200-TA2e-8375.41% 
DrosophilamRpL43-PA2e-6257.29% 
EBI UniRef50UniRef50_Q9W1L12e-6057.29%Mitochondrial ribosomal protein L43 n=18 Tax=Pancrustacea RepID=Q9W1L1_DROME
NCBI RefSeqXP_001986773.11e-6460.11%GH20346 [Drosophila grimshawi]
NCBI nr blastpgi|1950278062e-6360.11%GH20346 [Drosophila grimshawi]
NCBI nr blastxgi|1950278065e-6260.11%GH20346 [Drosophila grimshawi]
Group
KEGG pathwaycel:C25A1.136e-27 
 K03946 (NDUFA2)maps-> Huntington's disease
    Oxidative phosphorylation
    Alzheimer's disease
    Parkinson's disease
InterPro domain[37-110] IPR0077411.2e-26Ribosomal protein/NADH dehydrogenase domain
[27-111] IPR0123364.9e-26Thioredoxin-like fold
Orthology groupMCL11086 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS201608-TA
ATGTCTAATAGCAATTTATTTCTGAAATCCGGATTCGTTCGAGCACCATTGCAGAATGGTGTCGGTCGTTATGTTTGTCAATTGCAGAGGATTGTTTTAAAATTCTGCAAAAGTCACGGCGGGAGCCGAGGAATGAGAGATTTTATTGAACAGGATTTAGTCGATTTCGCAAGAGACAATCCCAGTGTAGTGGTTTACTTGAAGCCGCGAAGACATCGGAGTCCAGTCGTTGTAGCCGAGTATCTAAATGGCGATAGAGTTTGGATGAGTATGCAAAACAAAACACACTCGGAGATCACAAAATGGATTGAGAACATGAGAACACAGCAGGGAGACTTATCTGCGCTGCGACTCAGGAAATATCAATACACCGATCACCCATCCATCCAGGGTCCGTGGACACCGTTCACATTCAAGAATCCTGAACTCAACGTAGCCACATTACCCGATCCCAAATTCGGTGCAAACAATAGATTACCAATGTCAGCGACGGAACAGCTTAGAATGATGTTCGAAAAACAAAGCATCGGTAGCAAAGAAGACACAGAAGAAAAAAAGGCGGAATAA

Protein sequence:

>DPOGS201608-PA
MSNSNLFLKSGFVRAPLQNGVGRYVCQLQRIVLKFCKSHGGSRGMRDFIEQDLVDFARDNPSVVVYLKPRRHRSPVVVAEYLNGDRVWMSMQNKTHSEITKWIENMRTQQGDLSALRLRKYQYTDHPSIQGPWTPFTFKNPELNVATLPDPKFGANNRLPMSATEQLRMMFEKQSIGSKEDTEEKKAE-