DPOGS201608 | ||
---|---|---|
Transcript | DPOGS201608-TA | 567 bp |
Protein | DPOGS201608-PA | 188 aa |
Genomic position | DPSCF300152 + 360382-361132 | |
RNAseq coverage | 645x (Rank: top 20%) |
Annotation | ||||
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Heliconius | HMEL008104 | 3e-91 | 86.31% |   |
Bombyx | BGIBMGA012200-TA | 2e-83 | 75.41% |   |
Drosophila | mRpL43-PA | 2e-62 | 57.29% |   |
EBI UniRef50 | UniRef50_Q9W1L1 | 2e-60 | 57.29% | Mitochondrial ribosomal protein L43 n=18 Tax=Pancrustacea RepID=Q9W1L1_DROME |
NCBI RefSeq | XP_001986773.1 | 1e-64 | 60.11% | GH20346 [Drosophila grimshawi] |
NCBI nr blastp | gi|195027806 | 2e-63 | 60.11% | GH20346 [Drosophila grimshawi] |
NCBI nr blastx | gi|195027806 | 5e-62 | 60.11% | GH20346 [Drosophila grimshawi] |
Group | ||||
---|---|---|---|---|
KEGG pathway | cel:C25A1.13 | 6e-27 |   | |
  | K03946 (NDUFA2) | maps-> | Huntington's disease | |
  |   |   | Oxidative phosphorylation | |
  |   |   | Alzheimer's disease | |
  |   |   | Parkinson's disease | |
InterPro domain | [37-110] IPR007741 | 1.2e-26 | Ribosomal protein/NADH dehydrogenase domain | |
[27-111] IPR012336 | 4.9e-26 | Thioredoxin-like fold | ||
Orthology group | MCL11086 |   | Multiple-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS201608-TA
ATGTCTAATAGCAATTTATTTCTGAAATCCGGATTCGTTCGAGCACCATTGCAGAATGGTGTCGGTCGTTATGTTTGTCAATTGCAGAGGATTGTTTTAAAATTCTGCAAAAGTCACGGCGGGAGCCGAGGAATGAGAGATTTTATTGAACAGGATTTAGTCGATTTCGCAAGAGACAATCCCAGTGTAGTGGTTTACTTGAAGCCGCGAAGACATCGGAGTCCAGTCGTTGTAGCCGAGTATCTAAATGGCGATAGAGTTTGGATGAGTATGCAAAACAAAACACACTCGGAGATCACAAAATGGATTGAGAACATGAGAACACAGCAGGGAGACTTATCTGCGCTGCGACTCAGGAAATATCAATACACCGATCACCCATCCATCCAGGGTCCGTGGACACCGTTCACATTCAAGAATCCTGAACTCAACGTAGCCACATTACCCGATCCCAAATTCGGTGCAAACAATAGATTACCAATGTCAGCGACGGAACAGCTTAGAATGATGTTCGAAAAACAAAGCATCGGTAGCAAAGAAGACACAGAAGAAAAAAAGGCGGAATAA
>DPOGS201608-PA
MSNSNLFLKSGFVRAPLQNGVGRYVCQLQRIVLKFCKSHGGSRGMRDFIEQDLVDFARDNPSVVVYLKPRRHRSPVVVAEYLNGDRVWMSMQNKTHSEITKWIENMRTQQGDLSALRLRKYQYTDHPSIQGPWTPFTFKNPELNVATLPDPKFGANNRLPMSATEQLRMMFEKQSIGSKEDTEEKKAE-