DPOGS201664 | ||
---|---|---|
Transcript | DPOGS201664-TA | 630 bp |
Protein | DPOGS201664-PA | 209 aa |
Genomic position | DPSCF300103 - 428054-429436 | |
RNAseq coverage | 943x (Rank: top 14%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL011934 | 1e-37 | 85.88% |   |
Bombyx | BGIBMGA005419-TA | 3e-80 | 84.94% |   |
Drosophila | CHMP2B-PA | 2e-58 | 58.65% |   |
EBI UniRef50 | UniRef50_Q9VRJ5 | 2e-56 | 58.65% | CG4618 n=20 Tax=Arthropoda RepID=Q9VRJ5_DROME |
NCBI RefSeq | XP_002432114.1 | 2e-70 | 63.16% | Charged multivesicular body protein 2B, putative [Pediculus humanus corporis] |
NCBI nr blastp | gi|242023384 | 4e-69 | 63.16% | Charged multivesicular body protein 2B, putative [Pediculus humanus corporis] |
NCBI nr blastx | gi|242023384 | 4e-68 | 63.16% | Charged multivesicular body protein 2B, putative [Pediculus humanus corporis] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0015031 | 1.2e-38 | protein transport | |
KEGG pathway | phu:Phum_PHUM569980 | 6e-70 |   | |
  | K12192 (CHMP2B) | maps-> | Endocytosis | |
InterPro domain | [16-184] IPR005024 | 1.2e-38 | Snf7 | |
Orthology group | MCL17788 |   | Patchy |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS201664-TA
ATGAACTTTTTCAAAAAGGCACCAACAGTGAAAGAACAGCAACGAGAAAATGATCGTGAACTTCGGAAAGCAGGTAGAGATTTGGAACGTGATAAAAATGCATTGGAAAGAGAAGAAAAGAAGTTGGAGTTGGAAATAAAAAAAATGGCGAAAGAAGGAAATAACGAAGGTTGTAAAATACTTGCTAAGCAATTAGTACAAATGCGTAAGCAGAAAACTCGTATGTATGCAGCTAACAGTAAGATATCCAGTGTACAAATTCACAATAAAGCAATGGGTGCAAATATAGCTATTGCAGGTGCAATGGGTACAACAGCCAAGACCATGGGCAACATTAACAAAATATTGAACCCTGCACAAATATCGAAAGACATGGAAGCATTCAAAGTGGCCAGTGCTAAAATGGATATGACTGATGAAATGATTTCAGAAACTTTAGATGACATCATGACCGAGTCTGGGGATGAAGAGGAAACTGAAGGTGTTGTCAACCAAGTCCTTGATGAAATTGGTATTGAAATAAGTGGAAAGATGGCCAATGCACCTTCAGTTTCTCGCAACAAAGTTGGTGAATCCACATCTGACATTGACAAAGAACTTATGGCGCAGCTAACAAAACTCAAGTCATAG
>DPOGS201664-PA
MNFFKKAPTVKEQQRENDRELRKAGRDLERDKNALEREEKKLELEIKKMAKEGNNEGCKILAKQLVQMRKQKTRMYAANSKISSVQIHNKAMGANIAIAGAMGTTAKTMGNINKILNPAQISKDMEAFKVASAKMDMTDEMISETLDDIMTESGDEEETEGVVNQVLDEIGIEISGKMANAPSVSRNKVGESTSDIDKELMAQLTKLKS-