| DPOGS201687 | ||
|---|---|---|
| Transcript | DPOGS201687-TA | 408 bp |
| Protein | DPOGS201687-PA | 135 aa |
| Genomic position | DPSCF300096 - 555204-555697 | |
| RNAseq coverage | 798x (Rank: top 16%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016877 | 2e-52 | 72.44% | |
| Bombyx | BGIBMGA010789-TA | 3e-50 | 74.02% | |
| Drosophila | mRpS18C-PA | 7e-36 | 56.91% | |
| EBI UniRef50 | UniRef50_A4GUC7 | 4e-48 | 74.02% | Mitochondrial 28S ribosomal protein S18c n=2 Tax=Endopterygota RepID=A4GUC7_BOMMO |
| NCBI RefSeq | NP_001093290.1 | 6e-49 | 74.02% | mitochondrial 28S ribosomal protein S18c [Bombyx mori] |
| NCBI nr blastp | gi|153791409 | 2e-47 | 74.02% | mitochondrial 28S ribosomal protein S18c [Bombyx mori] |
| NCBI nr blastx | gi|153791409 | 1e-47 | 74.02% | mitochondrial 28S ribosomal protein S18c [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0005840 | 8.7e-51 | ribosome | |
| GO:0006412 | 8.7e-51 | translation | ||
| GO:0005622 | 8.7e-51 | intracellular | ||
| GO:0003735 | 8.7e-51 | structural constituent of ribosome | ||
| KEGG pathway | cqu:CpipJ_CPIJ003174 | 7e-39 | ||
| K10600 (UBOX5, UIP5) | maps-> | Ubiquitin mediated proteolysis | ||
| InterPro domain | [16-135] IPR001648 | 8.7e-51 | Ribosomal protein S18 | |
| Orthology group | MCL13315 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS201687-TA
ATGGCTTCATTACAAGTAGCTATACGACATTTGTTGTCCACATCAAGACGAGCGGTAATTTCAACAATAAGGCCGTATTCTCAAGCAGTGGTAGAAAATGATGACGCCCCAATCGAAATGGAAAATCCATATAAGAAGGAACGCAAACAATGTATTCTTTGCAAGCTGAATATAAGACCTGATTACAAGAACTACAGACTGCTATCACAGTTCCAGAGCCCTTACACGGGCAGAATATACGGAAGACATATAACCGGGTTGTGTAAAGCGAAGCAGGCCTTAGTGGATTCTGAGATAACGAAAGCTCAAAACAGCGGCTATATGCCTTACTATTACAAAGACAAGGCATTCCTGAAAGACCCAAAGCTCTTTGATCCCGAAAACCCCATTCGTTTCCATAGATTTTAA
>DPOGS201687-PA
MASLQVAIRHLLSTSRRAVISTIRPYSQAVVENDDAPIEMENPYKKERKQCILCKLNIRPDYKNYRLLSQFQSPYTGRIYGRHITGLCKAKQALVDSEITKAQNSGYMPYYYKDKAFLKDPKLFDPENPIRFHRF-