Monarch geneset OGS2.0

DPOGS201688
TranscriptDPOGS201688-TA834 bp
ProteinDPOGS201688-PA277 aa
Genomic positionDPSCF300096 - 552204-553037
RNAseq coverage2793x (Rank: top 4%)
Annotation
HeliconiusHMEL0168782e-15692.42% 
BombyxBGIBMGA010790-TA2e-15893.50% 
DrosophilaSdhB-PA1e-11573.52% 
EBI UniRef50UniRef50_P219122e-10869.41%Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=605 Tax=root RepID=DHSB_HUMAN
NCBI RefSeqNP_001164360.12e-12373.36%succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Tribolium castaneum]
NCBI nr blastpgi|2830468343e-12273.36%succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Tribolium castaneum]
NCBI nr blastxgi|2830468345e-12374.17%succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Tribolium castaneum]
Group
Gene OntologyGO:00060991.1e-83tricarboxylic acid cycle
GO:00551141.1e-83oxidation-reduction process
GO:00164911.1e-83oxidoreductase activity
GO:00515362.6e-48iron-sulfur cluster binding
GO:00090554.9e-33electron carrier activity
KEGG pathwaytca:6580665e-123 
 K00235 (SDHB, SDH2)maps-> Huntington's disease
    Citrate cycle (TCA cycle)
    Oxidative phosphorylation
    Alzheimer's disease
    Parkinson's disease
InterPro domain[27-251] IPR0044891.1e-83Succinate dehydrogenase/fumarate reductase iron-sulphur protein
[126-254] IPR0122852.6e-48Fumarate reductase, C-terminal
[20-125] IPR0126754.5e-42Beta-grasp fold, ferredoxin-type
[126-254] IPR0090516.3e-37Alpha-helical ferredoxin
[19-125] IPR0010414.9e-33Ferredoxin
Orthology groupMCL12532 Single-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS201688-TA
ATGACAACTGGTGCTTTTGGGCAACTGCGTACCTTCGCAACGTCATCAGCACTCGGTAAGAGGGTAAAGACTTTCGCCGTATATCGCTGGAACCCTGACGAACCTGACAAGAAGCCTTACACTCAGAACTTTGAGGTAGATCTCGATGACTGCGCGCCCATGGTTCTTGATGCTTTATTGAAAATCAAGAATGAAATAGATCCCACCCTCACCTTCAGAAGGTCCTGTCGCGAAGGTGTCTGTGGATCCTGCGCCATGAATATCGATGGGGTCAACACACTCGCCTGCATCAGTCACATTGACCAGAACTTGTCGAAGCCAACAAAAATTTATCCCTTACCACACATGTACGTAGTAAAGGATCTCGTGCCCGATCTCACCAACTTCTACCGTCAGTATCAGTCTATAGAACCATGGCTTCAGCGTGACAATGAGGCTGTGAAAGGTAAGGAGACTCAGCTGCTTCAAGACGTCGAGGACAGAGTAAAGCTTGACGGTTTGTATGAATGTGTTCTGTGTGCTTGTTGTTCCACCAGCTGCCCCTCCTACTGGTGGAACGGTGACAAGTATCTCGGTCCCGCAGTATTGATGCAAGCTTATAGATGGATAATCGACTCCCGTGACGATGCCGCTGCAAAACGTCTATCAAAGCTGAAAGACACATACTCCGTGTACCGTTGTCATACAATCATGAATTGCACCAGAACATGTCCCAAAGGCCTAAACCCTGGTAAGGCAATTGCCCAAATTAAAACCCTTCTATCGGGCATGGTGAAGAAGGAAGCTCCGATCATGGATCCCTCAGGCTTACAGAAACAGGCCGCCCACAACTAA

Protein sequence:

>DPOGS201688-PA
MTTGAFGQLRTFATSSALGKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEIDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQNLSKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWLQRDNEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIIDSRDDAAAKRLSKLKDTYSVYRCHTIMNCTRTCPKGLNPGKAIAQIKTLLSGMVKKEAPIMDPSGLQKQAAHN-