DPOGS201688 | ||
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Transcript | DPOGS201688-TA | 834 bp |
Protein | DPOGS201688-PA | 277 aa |
Genomic position | DPSCF300096 - 552204-553037 | |
RNAseq coverage | 2793x (Rank: top 4%) |
Annotation | ||||
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Heliconius | HMEL016878 | 2e-156 | 92.42% |   |
Bombyx | BGIBMGA010790-TA | 2e-158 | 93.50% |   |
Drosophila | SdhB-PA | 1e-115 | 73.52% |   |
EBI UniRef50 | UniRef50_P21912 | 2e-108 | 69.41% | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=605 Tax=root RepID=DHSB_HUMAN |
NCBI RefSeq | NP_001164360.1 | 2e-123 | 73.36% | succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Tribolium castaneum] |
NCBI nr blastp | gi|283046834 | 3e-122 | 73.36% | succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Tribolium castaneum] |
NCBI nr blastx | gi|283046834 | 5e-123 | 74.17% | succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Tribolium castaneum] |
Group | ||||
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Gene Ontology | GO:0006099 | 1.1e-83 | tricarboxylic acid cycle | |
GO:0055114 | 1.1e-83 | oxidation-reduction process | ||
GO:0016491 | 1.1e-83 | oxidoreductase activity | ||
GO:0051536 | 2.6e-48 | iron-sulfur cluster binding | ||
GO:0009055 | 4.9e-33 | electron carrier activity | ||
KEGG pathway | tca:658066 | 5e-123 |   | |
  | K00235 (SDHB, SDH2) | maps-> | Huntington's disease | |
  |   |   | Citrate cycle (TCA cycle) | |
  |   |   | Oxidative phosphorylation | |
  |   |   | Alzheimer's disease | |
  |   |   | Parkinson's disease | |
InterPro domain | [27-251] IPR004489 | 1.1e-83 | Succinate dehydrogenase/fumarate reductase iron-sulphur protein | |
[126-254] IPR012285 | 2.6e-48 | Fumarate reductase, C-terminal | ||
[20-125] IPR012675 | 4.5e-42 | Beta-grasp fold, ferredoxin-type | ||
[126-254] IPR009051 | 6.3e-37 | Alpha-helical ferredoxin | ||
[19-125] IPR001041 | 4.9e-33 | Ferredoxin | ||
Orthology group | MCL12532 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS201688-TA
ATGACAACTGGTGCTTTTGGGCAACTGCGTACCTTCGCAACGTCATCAGCACTCGGTAAGAGGGTAAAGACTTTCGCCGTATATCGCTGGAACCCTGACGAACCTGACAAGAAGCCTTACACTCAGAACTTTGAGGTAGATCTCGATGACTGCGCGCCCATGGTTCTTGATGCTTTATTGAAAATCAAGAATGAAATAGATCCCACCCTCACCTTCAGAAGGTCCTGTCGCGAAGGTGTCTGTGGATCCTGCGCCATGAATATCGATGGGGTCAACACACTCGCCTGCATCAGTCACATTGACCAGAACTTGTCGAAGCCAACAAAAATTTATCCCTTACCACACATGTACGTAGTAAAGGATCTCGTGCCCGATCTCACCAACTTCTACCGTCAGTATCAGTCTATAGAACCATGGCTTCAGCGTGACAATGAGGCTGTGAAAGGTAAGGAGACTCAGCTGCTTCAAGACGTCGAGGACAGAGTAAAGCTTGACGGTTTGTATGAATGTGTTCTGTGTGCTTGTTGTTCCACCAGCTGCCCCTCCTACTGGTGGAACGGTGACAAGTATCTCGGTCCCGCAGTATTGATGCAAGCTTATAGATGGATAATCGACTCCCGTGACGATGCCGCTGCAAAACGTCTATCAAAGCTGAAAGACACATACTCCGTGTACCGTTGTCATACAATCATGAATTGCACCAGAACATGTCCCAAAGGCCTAAACCCTGGTAAGGCAATTGCCCAAATTAAAACCCTTCTATCGGGCATGGTGAAGAAGGAAGCTCCGATCATGGATCCCTCAGGCTTACAGAAACAGGCCGCCCACAACTAA
>DPOGS201688-PA
MTTGAFGQLRTFATSSALGKRVKTFAVYRWNPDEPDKKPYTQNFEVDLDDCAPMVLDALLKIKNEIDPTLTFRRSCREGVCGSCAMNIDGVNTLACISHIDQNLSKPTKIYPLPHMYVVKDLVPDLTNFYRQYQSIEPWLQRDNEAVKGKETQLLQDVEDRVKLDGLYECVLCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIIDSRDDAAAKRLSKLKDTYSVYRCHTIMNCTRTCPKGLNPGKAIAQIKTLLSGMVKKEAPIMDPSGLQKQAAHN-