Monarch geneset OGS2.0

DPOGS201928
TranscriptDPOGS201928-TA2799 bp
ProteinDPOGS201928-PA932 aa
Genomic positionDPSCF300112 + 216226-233145
RNAseq coverage2440x (Rank: top 5%)
Annotation
HeliconiusHMEL0073060.071.29% 
BombyxBGIBMGA002661-TA0.086.94% 
DrosophilaLpR1-PK0.053.23% 
EBI UniRef50UniRef50_E2ALX50.064.75%Very low-density lipoprotein receptor n=3 Tax=Formicidae RepID=E2ALX5_CAMFO
NCBI RefSeqNP_001104808.10.085.78%lipophorin receptor isoform 1 [Bombyx mori]
NCBI nr blastpgi|944704630.087.64%lipophorin receptor [Galleria mellonella]
NCBI nr blastxgi|944704630.087.76%lipophorin receptor [Galleria mellonella]
Group
Gene OntologyGO:00055158.1e-17protein binding
GO:00055091.1e-09calcium ion binding
KEGG pathwayrno:3004382e-169 
 K12473 (LDLR)maps-> Endocytosis
InterPro domain[377-644] IPR0110426.6e-99Six-bladed beta-propeller, TolB-like
[83-120] IPR0021728.1e-17Low-density lipoprotein (LDL) receptor class A repeat
[483-526] IPR0000331.2e-14LDLR class B repeat
[330-370] IPR0018811.1e-09EGF-like calcium-binding
[330-369] IPR0130918.7e-08EGF calcium-binding
Orthology groupMCL10649 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS201928-TA
TCGCAGCGTAGTTGTACTGGTCACAATTTTGTTTGTGCAACCGGGCATTGCATACCCGGGGCCTGGCGTTGCGATGACACCCCGGATTGCCCTGATGGCTCTGATGAGCATCATTGTGAGGTGGAGTCATGCGGCCCAGAGGAATTCACATGCAGAGGAAAACGTGGAGAATGCGTCCCATTGACTTGGATGTGTGACGATAACGTTGATTGCTCAGATGGTTCTGACGAGAAAGCATGCAATGAAACTTGCCGGTCCGATGAGTTTACATGTGGAAATGGTAAATGTATACAACAAAGATGGGTTTGTGATGGTGATGACGACTGTGGTGATGGAAGCGATGAGGTCAAGTGTCCAGCACCGACCTGCCAACCCCACAGCCACTTCTCCTGTGCTGACGGACATTGTGTCACAGCTAGATGGCGCTGCGACGGTGACATTGATTGCCCTGATGGTAGTGATGAAATGGGCTGCGCGACAACACCTAAAATAACATCCCCGTGTATAGCGACTGAGTTTGAATGTCGTGACCGCATCACATGTGTTCACCGAGCTTGGGTCTGCGATGGTGATAAGGATTGTGCTGACGGCGGTGATGAAGCTCCTGAGCTTTGCCGCGGGAACGTCACTTGCAGACTAGATCAGTTCACATGCAAAGACCACAGCTGCATACCAGGAGCACTGTACTGCAACGGAGATAAAGACTGCCCGGATGGTAGCGACGAAGTTAACTGCACTAAACCAAAACACGTGTGCGACAAAAAGACAGAATTCGATTGTGGCGGCGGTATGTGCATACCCTTATCTAAGGTCTGCGACAAACGACCGGACTGTCCCAATTTTGAAGACGAACCTCGTGATAGATGTGGGGAAGATGAATGTGCCGTAAACAATGGAGGCTGTACACAAAAGTGTGTGGACACCCCAGTGGGGTACTACTGCGACTGTGAGAAAGGATACAAACTGTCTGATAACAGGACTTGCGAAGACATCGACGAATGTCTGGATCCGGGAGCGTGTTCCCAAATATGCACCAACGAGAAAGGCACCTTCAAATGCGAATGTCACCCCGGCTACGCGAGGGACCCTCGTGATAGGACCCGCTGCAAGGCCACCGAGGGTCATCCGTCACTGTTGTTCGCGAGACGCTTCGACATCAGGAAGATCAGCTTGGACCATCATGAGATGGTCGCCATAGTGAACGACACCAAGTCGGCCACAGCCCTCGACTACGTTTTCAGAACCGGAATGATCTTCTGGAGTGACGTCATCGATGAGAAAATTTACAAGGCCCCAATAGACGAAGGTAGCCAACGCACGGTGGTGATAGGAGATCAGCTGATCACATCCGATGGTCTCGCTGTCGACTGGATCTACAACCACCTGTATTGGACAGATACTGGCAAGAACCACATCGAGCTGGCCGACCTTCAAGGAAACATGAGGAAGATACTCATCAGAGACAAGCTCGAAGAACCGAGAGCCATAGCTCTAAACCCCCTGGATGGATGGATGTATTGGACCGATTGGGGCCAGGTTCCTAAGATCGAACGCGCTGGTATGGACGGATCCCATAGACAGACCATCGTCTCCTATGACGTCAAATGGCCCAACGGTCTCACTCTCGACCTCGTCCGGAAACGCGTATACTGGGTGGATGCGAAGGTGAACACAATATCGTCATGCAACTACGACGGCTCGGGTCGGCGCGTGGTGTTGTACTCCAGCGAGGTGCTCCGCCACCCCTTCAGCATCACCACCTTCGAGGACTGGGTCTACTGGACCGACTGGGACAAGACCGCCGTCTACCGCGCCAACAAGTTCAATGGAAAAGATATTGAAGCTATCACTTCAACTCATACGCTTCAAAACCCAATGGTGATCCACGTGTACCATCCGTACCGTCAGCCGGATGGTGTCAACTACTGCGCCGCTGTCAACGGTCACTGTTCTCACCTCTGTCTCCCAGCCCCAAAGATCGGTTCCAATTCACCGCGAGTCTCCTGCGCCTGCCCCAACGGCCTCCGACTCCTTCCCGACAACCAGATGTGCGTCGAGGACAATTCAGTAAGACCTGATGTGGAGGTGCATAAACCAAGTAATGATTCAAAGAAACTTAATATAGTTGAGGAAAATTCTAAGCCAAGGCCAACACATATGGTTAATTTTAGAAGAGAAGGGCTAGGCCTTCTCTTTAAGCTGGGGCGTGCTCTCGCTAACTCCGAAGACGCTCCGGAAGAACCCGAAGAAACAAAACCCACGGTCGATCCTGAAGCTGAGCCAATGAAGGCTTACTGGGAGAGCGATAAAGAGGAACTGGAAAACAAACAACAACCGTTCATAGACCTTTTCCTCAAAGACGCGGCTCTTGACAGGATACCAGACACGACGGAAAAACCAATCCAAGAATCTCATTACAGTTACGAAAGATTGAGTCTTGTTTATTTGCCTGACGCTCTCAAAAACTTTAACGTTAAGGGTGTGCCTGAAACTCCTAAAGTAGGTTCTGGAATCTCAAACGGCGGCCGCGACGCGAGCGTGGTGGCCGGCATCGTTGTATCTGTAATCTCAGGAATAATTATACTCGCTGCTTTGATCGCGGTTGTAATGTACCGGCATTACGTCCATCGTAATGTCACATCAATGAACTTCGACAATCCGGTCTACCGCAAAACGACTGAGAATCAATTCTCATTGGAACAAAATGGCTACGCACCGGGCGGCAAATTGTATCCCAGCACCGTCGGCGAAGAGGCCCAGGAACCACTCAATACACCTGGTACAAATGACTTTGTATAG

Protein sequence:

>DPOGS201928-PA
SQRSCTGHNFVCATGHCIPGAWRCDDTPDCPDGSDEHHCEVESCGPEEFTCRGKRGECVPLTWMCDDNVDCSDGSDEKACNETCRSDEFTCGNGKCIQQRWVCDGDDDCGDGSDEVKCPAPTCQPHSHFSCADGHCVTARWRCDGDIDCPDGSDEMGCATTPKITSPCIATEFECRDRITCVHRAWVCDGDKDCADGGDEAPELCRGNVTCRLDQFTCKDHSCIPGALYCNGDKDCPDGSDEVNCTKPKHVCDKKTEFDCGGGMCIPLSKVCDKRPDCPNFEDEPRDRCGEDECAVNNGGCTQKCVDTPVGYYCDCEKGYKLSDNRTCEDIDECLDPGACSQICTNEKGTFKCECHPGYARDPRDRTRCKATEGHPSLLFARRFDIRKISLDHHEMVAIVNDTKSATALDYVFRTGMIFWSDVIDEKIYKAPIDEGSQRTVVIGDQLITSDGLAVDWIYNHLYWTDTGKNHIELADLQGNMRKILIRDKLEEPRAIALNPLDGWMYWTDWGQVPKIERAGMDGSHRQTIVSYDVKWPNGLTLDLVRKRVYWVDAKVNTISSCNYDGSGRRVVLYSSEVLRHPFSITTFEDWVYWTDWDKTAVYRANKFNGKDIEAITSTHTLQNPMVIHVYHPYRQPDGVNYCAAVNGHCSHLCLPAPKIGSNSPRVSCACPNGLRLLPDNQMCVEDNSVRPDVEVHKPSNDSKKLNIVEENSKPRPTHMVNFRREGLGLLFKLGRALANSEDAPEEPEETKPTVDPEAEPMKAYWESDKEELENKQQPFIDLFLKDAALDRIPDTTEKPIQESHYSYERLSLVYLPDALKNFNVKGVPETPKVGSGISNGGRDASVVAGIVVSVISGIIILAALIAVVMYRHYVHRNVTSMNFDNPVYRKTTENQFSLEQNGYAPGGKLYPSTVGEEAQEPLNTPGTNDFV-