| DPOGS201992 | ||
|---|---|---|
| Transcript | DPOGS201992-TA | 570 bp |
| Protein | DPOGS201992-PA | 189 aa |
| Genomic position | DPSCF300060 + 150453-152627 | |
| RNAseq coverage | 1387x (Rank: top 9%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL004981 | 1e-58 | 76.63% | |
| Bombyx | BGIBMGA010396-TA | 5e-55 | 97.46% | |
| Drosophila | xl6-PA | 2e-30 | 60.77% | |
| EBI UniRef50 | UniRef50_E0VJB3 | 2e-40 | 73.39% | Transformer-2 sex-determining protein, putative n=3 Tax=Coelomata RepID=E0VJB3_PEDHC |
| NCBI RefSeq | NP_001091768.1 | 1e-53 | 98.29% | arginine/serine-rich splicing factor 7 [Bombyx mori] |
| NCBI nr blastp | gi|148298845 | 2e-52 | 98.29% | arginine/serine-rich splicing factor 7 [Bombyx mori] |
| NCBI nr blastx | gi|148298845 | 8e-70 | 97.56% | arginine/serine-rich splicing factor 7 [Bombyx mori] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0000166 | 1.3e-21 | nucleotide binding | |
| GO:0003676 | 2.8e-21 | nucleic acid binding | ||
| GO:0008270 | 2.2e-05 | zinc ion binding | ||
| KEGG pathway | tca:657225 | 5e-50 | ||
| K12896 (SFRS7) | maps-> | Spliceosome | ||
| InterPro domain | [6-87] IPR012677 | 1.3e-21 | Nucleotide-binding, alpha-beta plait | |
| [8-76] IPR000504 | 2.8e-21 | RNA recognition motif domain | ||
| Orthology group | MCL12855 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS201992-TA
ATGTCACGATATGGCGACTGCAAGGTTTATGTTGGTGATTTAGGAAACAACGCTAGTAAACCTGAACTTGAAGATGCATTTTCTTATTATGGCCCTTTAAGGAATGTTTGGGTGGCTAGAAATCCACCAGGTTTCGCTTTTGTTGAATTTGAAGATCCTCGGGATGCGGAAGATGCAATACGAGGTTTAGATGGACGAACAATATGTGGACGTCGTGCTCGAGTGGAAATGTCAAATGGCGGTCGGGGCTACGGGGGCCGCGGACCTCCTCCGCGCTCGCGGCTACCACCACGGCCCTACGACGACCGTTGTTATGACTGTGGAGACCGTGGCCATTACGCCAGAGACTGCACTCGACGCCGCCGTCGCAGGTGTAATGTTACTGTGAAGATCACAGTCGTTCGAGGTCTCGTCGCCGCACCCGTTCTCGTTCTCCAAGGTCTGGGTCCCGGTCTCGCAGCCGTTCCCGCTCTCGTTCCCGTTCCAAAGGGAGGTCCATGTCGCGTTCAAGATCACGCTCTCCGTCTAAAGATTCTAAGAAGTCCAATTAAAAATCTACCACAAAGGTAG
>DPOGS201992-PA
MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSNGGRGYGGRGPPPRSRLPPRPYDDRCYDCGDRGHYARDCTRRRRRRCNVTVKITVVRGLVAAPVLVLQGLGPGLAAVPALVPVPKGGPCRVQDHALRLKILRSPIKNLPQR-