DPOGS202023 | ||
---|---|---|
Transcript | DPOGS202023-TA | 447 bp |
Protein | DPOGS202023-PA | 148 aa |
Genomic position | DPSCF300053 - 834976-836154 | |
RNAseq coverage | 482x (Rank: top 26%) |
Annotation | ||||
---|---|---|---|---|
Heliconius | HMEL016775 | 4e-72 | 84.93% |   |
Bombyx | BGIBMGA012571-TA | 5e-58 | 77.60% |   |
Drosophila | Srp19-PA | 7e-41 | 52.82% |   |
EBI UniRef50 | UniRef50_F4WZL4 | 3e-44 | 62.32% | Signal recognition particle 19 kDa protein n=9 Tax=Arthropoda RepID=F4WZL4_ACREC |
NCBI RefSeq | NP_001040389.1 | 1e-65 | 75.68% | signal recognition particle 19 kDa protein [Bombyx mori] |
NCBI nr blastp | gi|114051175 | 2e-64 | 75.68% | signal recognition particle 19 kDa protein [Bombyx mori] |
NCBI nr blastx | gi|114051175 | 6e-64 | 75.68% | signal recognition particle 19 kDa protein [Bombyx mori] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0006614 | 1.7e-52 | SRP-dependent cotranslational protein targeting to membrane | |
GO:0048500 | 1.7e-52 | signal recognition particle | ||
GO:0008312 | 1.7e-52 | 7S RNA binding | ||
KEGG pathway | tca:656245 | 2e-49 |   | |
  | K03105 (SRP19) | maps-> | Protein export | |
InterPro domain | [6-146] IPR002778 | 1.7e-52 | Signal recognition particle, SRP19 subunit | |
Orthology group | MCL12238 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
---|
>DPOGS202023-TA
ATGGCAGCTGTAGTAACTTCATGGACTCCCGATAAAAAGCACACTGATCTTCAAAGATGGATTTGTATTTATCCAGCCTACTTGAACAGTAAAAAAACTCTTGCTGAAGGCCGAAAGTTGCCTAGAGATATATGTGTGGAAAATCCTACACATCAAGAAATAAGGGATGTGCTTTTCACAACTGGACTTCGTATTGGTGTTGAAAATAAATTGTACCCACGTGAACGTAGTAAGGAAATGCTGTACAGAGGAAGGATTCGTGTTGAATTAAAAAATGATGATGGTACACCAATAAAAGATGAGTATCCTACAAGAGAGGCAGTTATGAGGCACATTGTTGAATCAATACCAAAATTGAAGACTCGTCAAAATAGGCCTGCGGAACAGCAACCTCAGGCAGTTCAGCAAAGTAGCAATAAGAGCAAGGGAAAGAAAGGAAGACGATAA
>DPOGS202023-PA
MAAVVTSWTPDKKHTDLQRWICIYPAYLNSKKTLAEGRKLPRDICVENPTHQEIRDVLFTTGLRIGVENKLYPRERSKEMLYRGRIRVELKNDDGTPIKDEYPTREAVMRHIVESIPKLKTRQNRPAEQQPQAVQQSSNKSKGKKGRR-