| DPOGS202262 | ||
|---|---|---|
| Transcript | DPOGS202262-TA | 774 bp |
| Protein | DPOGS202262-PA | 257 aa |
| Genomic position | DPSCF300032 - 517710-520043 | |
| RNAseq coverage | 30x (Rank: top 75%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL005600 | 4e-129 | 82.89% | |
| Bombyx | BGIBMGA004913-TA | 3e-115 | 78.71% | |
| Drosophila | CG3756-PA | 2e-85 | 57.53% | |
| EBI UniRef50 | UniRef50_O15160 | 8e-74 | 53.17% | DNA-directed RNA polymerases I and III subunit RPAC1 n=51 Tax=Opisthokonta RepID=RPAC1_HUMAN |
| NCBI RefSeq | XP_001844509.1 | 8e-94 | 60.84% | DNA-directed RNA polymerase I 40 kDa polypeptide [Culex quinquefasciatus] |
| NCBI nr blastp | gi|170033286 | 1e-92 | 60.84% | DNA-directed RNA polymerase I 40 kDa polypeptide [Culex quinquefasciatus] |
| NCBI nr blastx | gi|170033286 | 7e-90 | 60.84% | DNA-directed RNA polymerase I 40 kDa polypeptide [Culex quinquefasciatus] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003899 | 6.4e-42 | DNA-directed RNA polymerase activity | |
| GO:0006351 | 6.4e-42 | transcription, DNA-dependent | ||
| GO:0046983 | 6.4e-32 | protein dimerization activity | ||
| GO:0003677 | 3.5e-14 | DNA binding | ||
| KEGG pathway | cqu:CpipJ_CPIJ003123 | 2e-93 | ||
| K03027 (RPC5) | maps-> | Cytosolic DNA-sensing pathway | ||
| Purine metabolism | ||||
| Pyrimidine metabolism | ||||
| RNA polymerase | ||||
| InterPro domain | [51-256] IPR011263 | 6.4e-42 | DNA-directed RNA polymerase, RpoA/D/Rpb3-type | |
| [82-203] IPR011262 | 6.4e-32 | DNA-directed RNA polymerase, insert domain | ||
| [37-148] IPR009025 | 3.5e-14 | DNA-directed RNA polymerase, RBP11-like | ||
| [52-207] IPR011261 | 1.2e-07 | DNA-directed RNA polymerase, dimerisation | ||
| Orthology group | MCL44097 | Insect specific | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS202262-TA
ATGCCGAAACTTGATGAGAAGCCCAGAGTTTTCTTAGAAGAATTTCGAGTTAAGAATGCACCTGACGATTATGGAATGGCAGACGAAAAATGGAATTTTAAGAAATTCACAAAGAAATTTCGTATTGTTATAGTCCGTATGGATAGTACTGAAATGGAATTTGATTTGATTGGCATTCAACCTGCTTTTGCCAATGCTTTTCGAAGGCTCATGTTAAGTGAAGTACCCAGTATGGCAATTGAAAAGGACGAAGTGCTTGCACATAGATTGGGGTTGATACCACTAAAGGCAGACCCGCGGTTATTTGAATTTCGTCCTGAAAATGCTGAAGAAGGGACTGAGTTTGACACTTTAGAGTTTTCATTAAAAATAAAATGCACAAATAATAAATATGGACCCAAAGACTCTTTCCGTGCTGAGGACTTGTATGAAAATCATAGCGTATACTCGTCTTCAATTAAATGGCATCCCATTGGAAATCAGGCGTCAATCCACAAGGAAGCTGATGTTGGTCCAGTGGATGATGACATCCTCATATCCAAGATGAGACCCGGCCATGAACTCGATATGCATCTGGTTGCTGTTAAAGGCATCGGCAAGGATCACGCCAAGTTCTCACCAGTGGCAACTGCCTCCTACCGCCTACTTCCTGAAGTAACTCTAACCCGTGAAGTGGATGGAAGTGAAGCGACCTTGCTACAGAGCTGCTTTTCACCTGGAGTCATCGGCCTGGATTCTGATGGCAAAGCTTTTCTACTTAAACGACCTCAATAA
>DPOGS202262-PA
MPKLDEKPRVFLEEFRVKNAPDDYGMADEKWNFKKFTKKFRIVIVRMDSTEMEFDLIGIQPAFANAFRRLMLSEVPSMAIEKDEVLAHRLGLIPLKADPRLFEFRPENAEEGTEFDTLEFSLKIKCTNNKYGPKDSFRAEDLYENHSVYSSSIKWHPIGNQASIHKEADVGPVDDDILISKMRPGHELDMHLVAVKGIGKDHAKFSPVATASYRLLPEVTLTREVDGSEATLLQSCFSPGVIGLDSDGKAFLLKRPQ-