DPOGS202271 | ||
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Transcript | DPOGS202271-TA | 810 bp |
Protein | DPOGS202271-PA | 269 aa |
Genomic position | DPSCF300032 - 451590-452664 | |
RNAseq coverage | 152x (Rank: top 53%) |
Annotation | ||||
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Heliconius | HMEL007642 | 2e-146 | 90.71% |   |
Bombyx | BGIBMGA004985-TA | 7e-127 | 77.99% |   |
Drosophila | CG5380-PB | 7e-87 | 57.25% |   |
EBI UniRef50 | UniRef50_Q9VD25 | 9e-85 | 57.25% | Probable DNA-directed RNA polymerase III subunit RPC6 n=25 Tax=Endopterygota RepID=RPC6_DROME |
NCBI RefSeq | XP_624984.1 | 6e-96 | 61.94% | PREDICTED: similar to DNA-directed RNA polymerase III 39 kDa polypeptide (RNA polymerase III C39 subunit) [Apis mellifera] |
NCBI nr blastp | gi|383863773 | 3e-95 | 61.57% | PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Megachile rotundata] |
NCBI nr blastx | gi|383863773 | 2e-92 | 61.57% | PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Megachile rotundata] |
Group | ||||
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Gene Ontology | GO:0003899 | 2e-92 | DNA-directed RNA polymerase activity | |
GO:0003677 | 2e-92 | DNA binding | ||
GO:0006351 | 2e-92 | transcription, DNA-dependent | ||
KEGG pathway | ame:552607 | 2e-95 |   | |
  | K03025 (RPC34) | maps-> | Cytosolic DNA-sensing pathway | |
  |   |   | Purine metabolism | |
  |   |   | Pyrimidine metabolism | |
  |   |   | RNA polymerase | |
InterPro domain | [12-269] IPR016049 | 7e-121 | RNA polymerase Rpc34-like | |
[1-269] IPR007832 | 2e-92 | RNA polymerase Rpc34 | ||
Orthology group | MCL13511 |   | Single-copy universal gene |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS202271-TA
ATGGCAGCTGCAGTGCCTGAATTAACTTCTGCTGAACTCGTAGCTGCAATTAACAAATTACTTCAGCAAGGGGTTTTCGATCTATATAATCAAGGAGGCTCTTTACTATATAGATTGAAAAATCAAAACTCCAAACAAGCAATAAAAGGGGCTGATAATGAAGAAAAAGTTGTATATAATTTAATAGAGGAAGCTGGTAATAAGGGAATATGGATAAGAGATATAAGAATCAGATCAAATCTGGCTAATACACAATTAACAAAAGTTTTAAAAAGTTTGGAAGGCAAGAAAGTTATTAAAGCCGTCAAATGTGTTAATGCATCCAAGAAAAAAGTTTATATGCTATTTAATTTAGAGCCCGACAGATCTGTATCTGGTGGTGCGTGGTATCAGGACCAGGATTTTGAATCTGAATTTGTTGACATTCTGAATCGTCAGTGCTTGAGATTCCTTCAACAAAGAGCCGATAAAATAAAAAATAATCCGAGAGGTCCCATAGTTGGCCGTACACAGTCATATGCCACAGCTGCCGAGGTTCAGAAATACATTACTGACTTAGGTATAAGTAAAGTTAAACTAGAAGTTGAAGACGTTATAACTATTCTGAACACATTAGTTTACGACGGGAAAGCTGAAAGTAATGTTTATCCCGACGGAAACAGAGTTTACAGGGCTATAGAATCTCTCCTACCTCCTCCAGGTTTAGTGCAGGTACCATGCGGAGTATGCCCTCTCATACACAAATGCAATTCAACAGGATTAATAACACCTCAAGATTGTAAATATATGGATGAGTGGCTCGAGCAATAA
>DPOGS202271-PA
MAAAVPELTSAELVAAINKLLQQGVFDLYNQGGSLLYRLKNQNSKQAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLKSLEGKKVIKAVKCVNASKKKVYMLFNLEPDRSVSGGAWYQDQDFESEFVDILNRQCLRFLQQRADKIKNNPRGPIVGRTQSYATAAEVQKYITDLGISKVKLEVEDVITILNTLVYDGKAESNVYPDGNRVYRAIESLLPPPGLVQVPCGVCPLIHKCNSTGLITPQDCKYMDEWLEQ-