Monarch geneset OGS2.0

DPOGS202312
TranscriptDPOGS202312-TA348 bp
ProteinDPOGS202312-PA115 aa
Genomic positionDPSCF300032 + 367235-367656
RNAseq coverage51x (Rank: top 70%)
Annotation
HeliconiusHMEL0105922e-1546.00% 
BombyxBGIBMGA004983-TA6e-1644.30% 
DrosophilaCG13510-PA4e-1234.62% 
EBI UniRef50UniRef50_A8CA041e-1034.78%Membrane-associated LPS-inducible TNF alpha factor protein-like protein (Fragment) n=1 Tax=Phlebotomus papatasi RepID=A8CA04_PHLPP
NCBI RefSeqXP_001865934.17e-1337.50%conserved hypothetical protein [Culex quinquefasciatus]
NCBI nr blastpgi|1700607392e-1137.50%conserved hypothetical protein [Culex quinquefasciatus]
NCBI nr blastxgi|1700607391e-1535.51%conserved hypothetical protein [Culex quinquefasciatus]
Group
KEGG pathway 
InterPro domain[41-114] IPR0066292.9e-17LPS-induced tumor necrosis factor alpha factor
Orthology group 
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS202312-TA
ATGACTACAGTCGCACAAAATTCAGAGCTTCCTCCTCCATATACGGAGAGGGTGGACACCGTGCAGCCGGTAACCAATCAGCCCATTGTACTTCAAACAGTTATAATACCTCTAACATTAAAAAGAACACCCGTTTATGTTAATTGCCCAAACTGCAATGAGAGGATATTGACAACTGTACAACACACGAACACACAAAAGACGCATATGATTGCAGGATTTGTATGTGGTCTAACTCTTTGTTGCATGCTCTGCTGTTTATCTGCAATACCGTACATAATTCCAACCTGCAAGAAAACTGAACATTACTGCCCGAACTGTAAATCTTATATAGGCACGTATTCATAA

Protein sequence:

>DPOGS202312-PA
MTTVAQNSELPPPYTERVDTVQPVTNQPIVLQTVIIPLTLKRTPVYVNCPNCNERILTTVQHTNTQKTHMIAGFVCGLTLCCMLCCLSAIPYIIPTCKKTEHYCPNCKSYIGTYS-