Monarch geneset OGS2.0

DPOGS202325
TranscriptDPOGS202325-TA1506 bp
ProteinDPOGS202325-PA501 aa
Genomic positionDPSCF300032 + 566683-568968
RNAseq coverage672x (Rank: top 19%)
Annotation
HeliconiusHMEL0050950.098.80% 
BombyxBGIBMGA004993-TA0.098.18% 
DrosophilaSrp54k-PA0.086.80% 
EBI UniRef50UniRef50_P610110.079.80%Signal recognition particle 54 kDa protein n=189 Tax=root RepID=SRP54_HUMAN
NCBI RefSeqNP_001091776.10.097.75%putative signal recognition particle 54 kDa protein [Bombyx mori]
NCBI nr blastpgi|1482988730.097.75%putative signal recognition particle 54 kDa protein [Bombyx mori]
NCBI nr blastxgi|1482988730.097.41%putative signal recognition particle 54 kDa protein [Bombyx mori]
Group
Gene OntologyGO:00066142.9e-217SRP-dependent cotranslational protein targeting to membrane
GO:00055252.9e-217GTP binding
GO:00485002.9e-217signal recognition particle
GO:00083122.9e-2177S RNA binding
GO:00001664.1e-05nucleotide binding
GO:00171114.1e-05nucleoside-triphosphatase activity
KEGG pathwayaga:AgaP_AGAP0046100.0 
 K03106 (SRP54, ffh)maps-> Bacterial secretion system
    Protein export
InterPro domain[2-429] IPR0063252.9e-217Signal recognition particle, SRP54 subunit
[101-296] IPR0008973.1e-91Signal recognition particle, SRP54 subunit, GTPase
[298-435] IPR0041251.3e-35Signal recognition particle, SRP54 subunit, M-domain
[1-95] IPR0138221.6e-22Signal recognition particle, SRP54 subunit, helical bundle
Orthology groupMCL10789 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS202325-TA
ATGGTTTTAGCAGATTTAGGTCGAAAAATAACAACAGCTCTACAGTCTCTCAGTCGAGCAACTATAATCAATGAAGAGGTACTCAATTCTATGCTAAAGCAGATTTGTGCTGCTCTATTAGAGGCTGATGTAAATATTCGTTTAGTCAAAAATCTCAGAGAAAATGTTCGAGCAGTCATTGATTTTGACGAAATGGCGGGAGGGCTCAACAAACGACGGATGATACAGTCCGCTGTATTCAAAGAACTGGTTAAGCTGGTAGATCCAGGTGTAAAACCTTACCAACCTGTTAAGGGAAAGCCAAATGTCATTATGTTTGTTGGTTTACAAGGTTCTGGTAAAACTACCACCTGTACCAAACTTGCCTACCATTATCTAAGGAAAAACTGGAAATCATGCTTAGTTTGTGCTGATACATTCAGAGCTGGTGCTTATGATCAGGTTAAACAGAATTGTACCAAGGCAAGAATACCATTTTATGGCAGTTATACTGAAGTAGATCCAGTAGTGATTGCTTCAACCGGAGTTGACATGTTCAAAAAGGAAGGCTTTGAAATGATCATAGTGGACACCAGTGGACGACACAAGCAGGAGGAATCGCTTTTCGAGGAGATGTTGGCAGTTGCTACAGCTATTAAACCCGACAACATAATATTTGTGATGGACGCGACAATTGGTCAAGCTTGTGAGTCCCAGGCCCGTGCTTTCAAGGATAAAGTAGATATCGGTTCAGTCATCATCACCAAGTTAGATGGTCATGCTAAGGGTGGGGGTGCATTATCAGCTGTAGCGGCAACACAAAGTCCTATAATATTCATTGGTACTGGAGAACATATTGATGACTTGGAGCCATTCAAAACAAAGCCTTTCATCAATAAACTGTTGGGTATGGGAGACATTGAGGGTCTACTTGATAAAGTCCATGAGTTAAAACTTGATGATAACGATGAGCTCTTAGAGAAGCTGAAGCATGGTCAGTTCACATTGAGGGCCATGTATGAACAGTTTCAGAACATCATGAAAATGGGACCATTCTCTCAGATCATGGGCATGATCCCAGGATTCTCTCAAGACTTAATGTCGAAGGGAAGTGAACAGGAATCCATGGCAAAACTGAAACGGCTCATGACCATTATGGACTCTATGAATGAAGGTGAATTGGATCACCGTGATGGAGCTAAGTTATTTTCGAAGCAGCCCACTCGAATTACCAGGGTCGCGCAAGGTGCTGGTGTGACTGAGAGGGATGTTAAAGATCTTATAGCCCAGTACACTAAATTTGCGGCGGTGGTAAAGAAAATGGGCGGCATCAAAGGTTTATTCAAGGGTGGTGATATGGCTAAGAACGTTAACCAGACTCAAATGGCCAAGCTGAATCAACAGATGGCCAAGATGATGGACCCAAGGATTCTCCAACAAATGGGCGGTATGTCGGGCCTGCACAACATGATGAGACAGTTACAACAAGGTTCGAGCGGCATGAACAGTTTAATGGGCGGCAAATGA

Protein sequence:

>DPOGS202325-PA
MVLADLGRKITTALQSLSRATIINEEVLNSMLKQICAALLEADVNIRLVKNLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPVKGKPNVIMFVGLQGSGKTTTCTKLAYHYLRKNWKSCLVCADTFRAGAYDQVKQNCTKARIPFYGSYTEVDPVVIASTGVDMFKKEGFEMIIVDTSGRHKQEESLFEEMLAVATAIKPDNIIFVMDATIGQACESQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFINKLLGMGDIEGLLDKVHELKLDDNDELLEKLKHGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKRLMTIMDSMNEGELDHRDGAKLFSKQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMAKLNQQMAKMMDPRILQQMGGMSGLHNMMRQLQQGSSGMNSLMGGK-