MonarchBase - Protein-coding gene

DPOGS202328
Transcript	DPOGS202328-TA	1602 bp
Protein	DPOGS202328-PA	533 aa
Genomic position	DPSCF300032 + 593429-596658
RNAseq coverage	203x (Rank: top 47%)

Annotation
*Heliconius*	HMEL005099	6e-53	40.53%
*Bombyx*	BGIBMGA004994-TA	2e-146	96.00%
*Drosophila*	RpII33-PA	5e-130	84.80%
EBI UniRef50	UniRef50_F4X4P8	2e-115	77.20%	DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Myrmicinae RepID=F4X4P8_ACREC
NCBI RefSeq	NP_001040388.1	6e-145	96.00%	DNA-directed RNA polymerase II polypeptide [Bombyx mori]
NCBI nr blastp	gi\|40645083	1e-144	96.40%	homologue of DNA-directed RNA polymerase II subunit [Antheraea pernyi]
NCBI nr blastx	gi\|40645083	2e-140	95.65%	homologue of DNA-directed RNA polymerase II subunit [Antheraea pernyi]

Group
Gene Ontology	GO:0003899	4.4e-87	DNA-directed RNA polymerase activity
	GO:0006351	4.4e-87	transcription, DNA-dependent
	GO:0008152	2.1e-47	metabolic process
	GO:0003824	2.1e-47	catalytic activity
	GO:0030170	2.1e-47	pyridoxal phosphate binding
	GO:0046983	4.6e-42	protein dimerization activity
	GO:0003677	2.6e-23	DNA binding
KEGG pathway	ame:552458	4e-132
	K03011 (RPB3)	maps->	Huntington's disease
			Purine metabolism
			Pyrimidine metabolism
			RNA polymerase
InterPro domain	[18-252] IPR011263	4.4e-87	DNA-directed RNA polymerase, RpoA/D/Rpb3-type
	[281-484] IPR001926	2.1e-47	Pyridoxal phosphate-dependent enzyme, beta subunit
	[44-174] IPR011262	4.6e-42	DNA-directed RNA polymerase, insert domain
	[4-265] IPR009025	2.6e-23	DNA-directed RNA polymerase, RBP11-like
	[20-249] IPR011261	5.8e-07	DNA-directed RNA polymerase, dimerisation
Orthology group	MCL14950		Single-copy universal gene

Nucleotide sequence:

>DPOGS202328-TA
ATGCCGTACGCAAATCAACCATCAGTACATATAACAGAATTAACAGACGACAATGTTAAATTTGTCGTCGAAGATACAGAGCTCAGCGTTGCCAACAGCATGCGACGAGTTTTCATAGCAGAGACGCCGACAATGGCTATTGACTGGGTTCAACTGGAAGCAAACTCAACAGTTCTAAGTGACGAATTCCTCGCTCATCGTATTGGTTTAATACCCCTGATATCTGATGACGTCGTTGATAAAATACGTTACTCCAGGGACTGCATGTGTGCAGATTTCTGTACTGAATGCAGTGTGGAATTTACATTGGATGTAAAGTGCACTGGCGATCAAACAAGACATGTGACAACTGCTGATTTAAAATCTAGTGACCCACGAGTGGTGCCGGTCACTTCACGCCATAGAGATGAAGACCAGGCAGATTATGGTGAACTTGATGAAATCTTGATTATCAAGCTACGTAAGGGACAAGAATTAAAGTTGCGAGCATATGCCAAAAAGGGGTTCGGAAAAGAGCATGCCAAATGGAATCCAACATCCGGTGTGTGTTTTGAGTATGATCCTGACAATATAATGAGACATACATTATACCCAAAGCCAGACGAGTGGCCGAAGAGTGAGCATACAGAGCTGGATGAGGATCAGTATGAAGCTGATTTCAACTGGGAAGCAAAACCAAACAAATTCTTCTATAATGTAGAATCCTCGGGAGCATTGAAACCGGAGAATATAGTGTTGATGGGCATTGTTGAGTCTAAGTATGTAGGGAATCATTTTTGCAATGTGCTACTAAAATGCGAAAACCTACAACTTACCGGCAGTTCTGACAGGTTGGACTTGTTAGCTGGATATGGGACATTAGGGTTGGAGATTCTTTCTCAGGTTGATAAGTTAGATGCTATAATATGCCCCGTCGGCACCGGAGGCCTCATAGCTAGCATATTGGTGGCAGTTAAATCCTTAAAACCCCAATGTTTGATTTATGGTGTTGAAAGTTCAGGAGCACCAACTATGAGTAAAGCCTTGCAAGAGAAGAAACCAACGATAATTCTAGTCAAACCAACAATTGCTGAAAGCATTGCCGATAAAATAGCAAGCAACAATGCTTTTCATATCATTAAAAGATATCTAACCAAAATGATCACTGTTGATGATTTGTGGATATCAAGAGCTATGGTTAACTTATTGGAGAGAGAAAAGATAATAGTGGAAGCGGCTGCACCTACACCAGTCGCCGCCATAATGGCGGGAAAAGTTCCTGAACTACGAGGAAAAAATGTCGTGTGCGTGTTGACTGGTGGTAATATAAAATTATCTCGTCTGCCTTACATCGTGGATCGCGGTCTAATGGCTGAAGGGCGGCTCGTTGGGTTTTCGATCACTTTGCCGGATGGACCAGCTGAGATTGCCCGTCTGCTGACTAAAGTTGTGGATACCGGTGCGGACGTGAGGAGTTTCGAACCGGAACGGTCTTGGATTAAGCGAGACGCTCTTAATGTCACCGTATTCATGTTACTTGAAACCAGTGATCCCAGTCACGCGAAGGAATTGGAGAAGAAATTACTTAAAGATTATCCTCATTCTCAAATCATTTCAGCATAA

Protein sequence:

>DPOGS202328-PA
MPYANQPSVHITELTDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCADFCTECSVEFTLDVKCTGDQTRHVTTADLKSSDPRVVPVTSRHRDEDQADYGELDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTSGVCFEYDPDNIMRHTLYPKPDEWPKSEHTELDEDQYEADFNWEAKPNKFFYNVESSGALKPENIVLMGIVESKYVGNHFCNVLLKCENLQLTGSSDRLDLLAGYGTLGLEILSQVDKLDAIICPVGTGGLIASILVAVKSLKPQCLIYGVESSGAPTMSKALQEKKPTIILVKPTIAESIADKIASNNAFHIIKRYLTKMITVDDLWISRAMVNLLEREKIIVEAAAPTPVAAIMAGKVPELRGKNVVCVLTGGNIKLSRLPYIVDRGLMAEGRLVGFSITLPDGPAEIARLLTKVVDTGADVRSFEPERSWIKRDALNVTVFMLLETSDPSHAKELEKKLLKDYPHSQIISA-

Monarch geneset OGS2.0

Nucleotide sequence:

Protein sequence: