| DPOGS202373 | ||
|---|---|---|
| Transcript | DPOGS202373-TA | 756 bp |
| Protein | DPOGS202373-PA | 251 aa |
| Genomic position | DPSCF300104 + 170098-173479 | |
| RNAseq coverage | 213x (Rank: top 46%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL002890 | 3e-93 | 70.00% | |
| Bombyx | BGIBMGA013896-TA | 2e-111 | 83.41% | |
| Drosophila | Ski6-PA | 4e-85 | 60.73% | |
| EBI UniRef50 | UniRef50_E0VB94 | 4e-87 | 64.44% | Exosome complex exonuclease RRP41, putative n=13 Tax=Coelomata RepID=E0VB94_PEDHC |
| NCBI RefSeq | XP_001663263.1 | 4e-95 | 70.04% | exosome complex exonuclease RRP41, putative [Aedes aegypti] |
| NCBI nr blastp | gi|308512717 | 6e-120 | 84.62% | exosome complex exonuclease RRP41 [Biston betularia] |
| NCBI nr blastx | gi|308512717 | 1e-115 | 84.62% | exosome complex exonuclease RRP41 [Biston betularia] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0006396 | 2.8e-11 | RNA processing | |
| GO:0003723 | 2.8e-11 | RNA binding | ||
| KEGG pathway | aag:AaeL_AAEL012812 | 1e-94 | ||
| K11600 (RRP41, EXOSC4, SKI6) | maps-> | RNA degradation | ||
| InterPro domain | [12-159] IPR020568 | 5.2e-43 | Ribosomal protein S5 domain 2-type fold | |
| [21-151] IPR001247 | 5.5e-36 | Exoribonuclease, phosphorolytic domain 1 | ||
| [148-237] IPR015847 | 2.8e-11 | Exoribonuclease, phosphorolytic domain 2 | ||
| Orthology group | MCL12781 | Single-copy universal gene | ||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS202373-TA
ATGCCGGGACCCGATTTATTATCAAGCCAAGGGCTTCGGCTGGATGGTAGAAGACCTAACGAGCTTCGTCGGATCAGGTGTAAATTGGGAGTATTCACTCAACCAGACGGAAGCGCTTATTTGGAACAAGGAAATACGAAAGTTTTAGCGGCTGTATATGGCCCCCATCAGGTCCGCAGGTTCAGGAAGAGCTCAGCGGAAGGTGTAGTTGTGAATTGTCAGTATAGTATGGCTACATTTTCGACTGGTGAGAGGAAAAATCGACCGCGGGGTGATCGTAAATCCCAAGAGATGTCAATGCATCTTAGACAGGCCCTCACGGCTGCTATTAAGACGGAAATGTACCCACGCTCACAGATTGACATCTATGTTGAAGTGTTACAGGCAGATGGTGGTGCGTATTGCGCGAGTGTGAACGCCTCGACGCTGGCGTTGATAGACGCGGGTATACCTCTGAAGGCCTATGTGTGTTCGTGCTCGGCGTCTATGGCGTGGTTGGACGGGGTGCCGGAGCCCCTACTCGACGTGGGCCACGTTGAGGAGGCGGCCGGCGGCGTGACCTTGACAGTCGCGAGTCTACCTAGTACTGGTAGTATAGCACTATTGGAGCTCTCTCATAGGTTGCACAGTGATTACTTCGACACTGTTCTCAGTAGAGCCATGCAGGGATGTAGAGATATTGAAGTTATATTAGACAAGGCTGTGAGAGATCACCTCGCTGAAGGATGGACCAAACAAGATGTTATCACTATATGA
>DPOGS202373-PA
MPGPDLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRRFRKSSAEGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADGGAYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVEEAAGGVTLTVASLPSTGSIALLELSHRLHSDYFDTVLSRAMQGCRDIEVILDKAVRDHLAEGWTKQDVITI-