DPOGS202468 | ||
---|---|---|
Transcript | DPOGS202468-TA | 405 bp |
Protein | DPOGS202468-PA | 134 aa |
Genomic position | DPSCF300174 + 411377-412075 | |
RNAseq coverage | 135x (Rank: top 56%) |
Annotation | ||||
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Heliconius | HMEL003604 | 5e-39 | 62.39% |   |
Bombyx | BGIBMGA010883-TA | 5e-45 | 72.57% |   |
Drosophila | His2A:CG33850-PA | 6e-39 | 62.39% |   |
EBI UniRef50 | UniRef50_A7TCZ1 | 6e-41 | 61.36% | Predicted protein n=12 Tax=Eukaryota RepID=A7TCZ1_NEMVE |
NCBI RefSeq | NP_001153667.1 | 8e-44 | 72.57% | histone H2AX-like protein [Bombyx mori] |
NCBI nr blastp | gi|237648980 | 2e-42 | 72.57% | histone H2AX-like protein [Bombyx mori] |
NCBI nr blastx | gi|237648980 | 3e-43 | 69.53% | histone H2AX-like protein [Bombyx mori] |
Group | ||||
---|---|---|---|---|
Gene Ontology | GO:0005634 | 1.4e-61 | nucleus | |
GO:0003677 | 1.4e-61 | DNA binding | ||
GO:0006334 | 1.4e-61 | nucleosome assembly | ||
GO:0000786 | 1.4e-61 | nucleosome | ||
KEGG pathway | nve:NEMVE_v1g83640 | 1e-41 |   | |
  | K11251 (H2A) | maps-> | Systemic lupus erythematosus | |
InterPro domain | [1-119] IPR002119 | 1.4e-61 | Histone H2A | |
[6-121] IPR009072 | 2.9e-48 | Histone-fold | ||
[14-86] IPR007125 | 6.6e-22 | Histone core | ||
Orthology group | MCL30791 |   | Lepidoptera specific |
Genotypes for resequenced monarchs and outgroup Danaus species |
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>DPOGS202468-TA
ATGTCTGGGAACAAATCTACTTCAACTAAATCCAAAACCAAGAGCTCCCGCTCTGGTCTTACCTTTCCTGTTGGACGAGTTCACAGAATTTTAAGAAAAGGGCGATATGCTTCTAGAATTGGTTGTGGAGCAGCAGTCTATATTTCAGCAGTGCTTGAATATCTTTCTGCTGAAATTTTAGAATTATCAGCTAAAGCTGCTCAAGATAATAATAGGGCCAGAATATTACCAAGGCATATAATGTTGGCTATAGGCAACGATGAAGAGCTAGATAGAATGCTGAGTGGTGTGACTATATCACATGGCGGAGTGATGCCGAGGATTGAACCAGAGTTACTACCCAAGAAAACTGCCATTAAAAGCCACAGTACAGATACATCAATGATGGCGTCACAGGAGTACTGA
>DPOGS202468-PA
MSGNKSTSTKSKTKSSRSGLTFPVGRVHRILRKGRYASRIGCGAAVYISAVLEYLSAEILELSAKAAQDNNRARILPRHIMLAIGNDEELDRMLSGVTISHGGVMPRIEPELLPKKTAIKSHSTDTSMMASQEY-