| DPOGS202471 | ||
|---|---|---|
| Transcript | DPOGS202471-TA | 414 bp |
| Protein | DPOGS202471-PA | 137 aa |
| Genomic position | DPSCF300174 + 422917-423925 | |
| RNAseq coverage | 0x (Rank: top 96%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL017302 | 6e-17 | 42.98% | |
| Bombyx | BGIBMGA010884-TA | 5e-17 | 52.27% | |
| Drosophila | CG6745-PA | 2e-13 | 34.43% | |
| EBI UniRef50 | UniRef50_E0VTP6 | 8e-16 | 38.46% | tRNA pseudouridine synthase D, putative n=1 Tax=Pediculus humanus corporis RepID=E0VTP6_PEDHC |
| NCBI RefSeq | XP_002429490.1 | 1e-16 | 38.46% | tRNA pseudouridine synthase D, putative [Pediculus humanus corporis] |
| NCBI nr blastp | gi|242018039 | 3e-15 | 38.46% | tRNA pseudouridine synthase D, putative [Pediculus humanus corporis] |
| NCBI nr blastx | gi|345488002 | 1e-15 | 38.02% | PREDICTED: pseudouridylate synthase 7 homolog [Nasonia vitripennis] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0003723 | 2.4e-19 | RNA binding | |
| GO:0009451 | 2.4e-19 | RNA modification | ||
| GO:0009982 | 2.4e-19 | pseudouridine synthase activity | ||
| GO:0001522 | 2.4e-19 | pseudouridine synthesis | ||
| KEGG pathway | ||||
| InterPro domain | [23-106] IPR001656 | 2.4e-19 | Pseudouridine synthase, TruD | |
| [23-100] IPR020103 | 2e-10 | Pseudouridine synthase, catalytic domain | ||
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS202471-TA
ATGGAAGCTTGTGGTTCTGTGCGACCCATACAGCGCTATATCAGAGAATTGAAGCGGAATCCATCGTACAACCTGAGCGGTGGTTACCGTCACGTGGTGTGTCGCGTGTCGGACATGTCCTGGAGGTGTGTGAGGTACGACCGGCCCACCGACGACCTCGTGCTCTCAGACGCCGACCTCATTGACGGGGTCAACATCACTCACAATGAGGATGGTAAATACAAGGCTTTGTTGCTCACAATGACCTTGCCCACGAGCTGTTACGCGACTATGGCGCTGCGGGAATTGTTGCGTGTGGGCACTTCGAGTGACGTGCAAGCCTTACAGAACGACTACCACGTCGACAAAGACGCTGTCAAAAGAAAGATGGCCGACGACGAAACAGACGCCAAGAAAACTAAAGTTGACGAATAA
>DPOGS202471-PA
MEACGSVRPIQRYIRELKRNPSYNLSGGYRHVVCRVSDMSWRCVRYDRPTDDLVLSDADLIDGVNITHNEDGKYKALLLTMTLPTSCYATMALRELLRVGTSSDVQALQNDYHVDKDAVKRKMADDETDAKKTKVDE-