| DPOGS202584 | ||
|---|---|---|
| Transcript | DPOGS202584-TA | 576 bp |
| Protein | DPOGS202584-PA | 191 aa |
| Genomic position | DPSCF300447 - 30338-32996 | |
| RNAseq coverage | 2x (Rank: top 91%) | |
| Annotation | ||||
|---|---|---|---|---|
| Heliconius | HMEL016583 | 2e-58 | 64.61% | |
| Bombyx | BGIBMGA005723-TA | 4e-59 | 68.10% | |
| Drosophila | HisCl1-PA | 4e-54 | 87.27% | |
| EBI UniRef50 | UniRef50_Q9VGI0 | 4e-52 | 87.27% | Histamine-gated chloride channel subunit 1 n=28 Tax=Coelomata RepID=Q9VGI0_DROME |
| NCBI RefSeq | XP_001946739.1 | 4e-54 | 73.05% | PREDICTED: similar to histamine-gated chloride channel, partial [Acyrthosiphon pisum] |
| NCBI nr blastp | gi|328720498 | 4e-53 | 73.05% | PREDICTED: glycine receptor subunit alpha-4-like [Acyrthosiphon pisum] |
| NCBI nr blastx | gi|328720498 | 6e-53 | 65.64% | PREDICTED: glycine receptor subunit alpha-4-like [Acyrthosiphon pisum] |
| Group | ||||
|---|---|---|---|---|
| Gene Ontology | GO:0016021 | 3.9e-73 | integral to membrane | |
| GO:0006811 | 3.9e-73 | ion transport | ||
| GO:0016020 | 6.7e-15 | membrane | ||
| GO:0006810 | 2.2e-08 | transport | ||
| GO:0005230 | 2.2e-08 | extracellular ligand-gated ion channel activity | ||
| KEGG pathway | dre:192124 | 1e-22 | ||
| K05195 (GLRA3) | maps-> | Neuroactive ligand-receptor interaction | ||
| InterPro domain | [11-119] IPR006201 | 3.9e-73 | Neurotransmitter-gated ion-channel | |
| [76-119] IPR006029 | 6.7e-15 | Neurotransmitter-gated ion-channel transmembrane domain | ||
| [79-99] IPR006028 | 8.7e-13 | Gamma-aminobutyric acid A receptor | ||
| [11-76] IPR006202 | 2.2e-08 | Neurotransmitter-gated ion-channel ligand-binding | ||
| Orthology group | ||||
| Genotypes for resequenced monarchs and outgroup Danaus species |
|---|
>DPOGS202584-TA
ATGCTGGATATGCAATCAAACAGATATATCTTGTTATTATTTTCAGTATCACATACGGTGCATGACTTAGTATTTATCTGGAACCTAACAGATCCTTTGGTTGTAAATCCAGACATCGAACTCCCTCAACTAGACATAGCTAACAACTTTACCTCCGACTGCACTATCGAGTACTCCACAGGTAACTTCACATGCCTAGCGGTAGTTTTCAACTTACGCCGACGTCTTGGCTACCACCTGTTCCACACATACATACCATCCGCGCTCATTGTAGTGATGTCCTGGATATCTTTCTGGATTAAGCCGGAAGCTATCCCTGCGAGGGTTACCCTCGGAGTAACCTCTCTTTTGACCTTGGGTAATTTACATTTCTATCATTCTGTAGACTATATATACATTGTAACAGGCGTTCATAATCACAAAAAAGGTTGTATGTTCATAACCTTTAAAAATAATTACGTAACTTTTATCTTCTTGGACGTGCAAACTCATTTTAACCCCTGTTCAAACAAATATGACGAACAAGTCGCAAAGTTTTGCGATAAAAGTGTCATTTGTTATATACGAGCGCTCTGA
>DPOGS202584-PA
MLDMQSNRYILLLFSVSHTVHDLVFIWNLTDPLVVNPDIELPQLDIANNFTSDCTIEYSTGNFTCLAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLGNLHFYHSVDYIYIVTGVHNHKKGCMFITFKNNYVTFIFLDVQTHFNPCSNKYDEQVAKFCDKSVICYIRAL-