Monarch geneset OGS2.0

DPOGS202675
TranscriptDPOGS202675-TA1377 bp
ProteinDPOGS202675-PA458 aa
Genomic positionDPSCF300039 + 659408-679872
RNAseq coverage178x (Rank: top 50%)
Annotation
HeliconiusHMEL0093150.097.46% 
BombyxBGIBMGA000843-TA0.094.96% 
DrosophilaCG12344-PA0.070.34% 
EBI UniRef50UniRef50_Q8SWZ10.070.34%CG12344 n=27 Tax=Endopterygota RepID=Q8SWZ1_DROME
NCBI RefSeqXP_001861289.10.071.52%neurotransmitter gated ion channel [Culex quinquefasciatus]
NCBI nr blastpgi|1700503900.071.52%neurotransmitter gated ion channel [Culex quinquefasciatus]
NCBI nr blastxgi|1582897480.071.96%AGAP010694-PA [Anopheles gambiae str. PEST]
Group
Gene OntologyGO:00160211.2e-242integral to membrane
GO:00068111.2e-242ion transport
GO:00160201.1e-39membrane
GO:00068101.1e-39transport
GO:00052301.1e-39extracellular ligand-gated ion channel activity
KEGG pathwayptr:4717124e-60 
 K05193 (GLRA1)maps-> Neuroactive ligand-receptor interaction
InterPro domain[5-447] IPR0062011.2e-242Neurotransmitter-gated ion-channel
[34-239] IPR0062021.1e-39Neurotransmitter-gated ion-channel ligand-binding
[240-452] IPR0060291.3e-35Neurotransmitter-gated ion-channel transmembrane domain
[243-263] IPR0060281.6e-27Gamma-aminobutyric acid A receptor
Orthology groupMCL16629 Insect specific
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS202675-TA
ATGGTTTCTCGTATCTGGCGTGCTACATTTTTCTTCTTAATATGGTTATGTAATGACGTCACGTCTAAGAGGAATCACACGTTGAAACCAAGGGTCGTGTTGCCAGAGAATTATGTTAAAGAGATGCGACCTCCTTCTCGCAAAGGGGATCCCGTCGTTGTCGAATTCAGTATCTACGTGGTTGACGTTAATTCCATAAACGTTGAGGACATGGACTTCAGAGTGGATATGTTTATACGACAAACTTGGATCGAAAGCAGACTACAGTTACCAGAGGACATTTTTGAGGAAGGTGACGATCATGTTACTCTGCCTCCAGAATTCTTCAACAATCTTTGGCATCCAGACCCTTACTTCCTAAACTCCAAAGTAACGGAGATAGCCGAATTGACTCATAAATTTTCGTCAGTGACCTTATACCGAAACCAGACAGTGAGGTATGCGGCCCGAATGCACGCTATCATTGCTTGCCAGATGGAATTTCAGCTTTATCCGATGGACATACAATCCTGTCCTATTTACATAGAAAGTTTTTCCTATAGCAATCAAAAAGTGAGATTCCGCTGGAGTGTGGCAGGTGTGACTATCAATCCAGAACTCAAGTTATTACAATATCATATCGGTGAACCGCTGCGTCTGGAAGAAACTAACGGTTACATGATCGATAAGGACGGTAACTACTCCAGACTTGTGGTTTATTTTAGATTTGAACGTCAAATTGGTCATCATTTAATTCAAACCTTTGCACCTTCCTCCCTTGTCGTGATGTTGTCCTGGTTTAGCTTTTGGTTGGATCTAGACGCAATACCCGGTCGAGTTACATTGTTAGTTACTTGCATGTTGACGCTTGTTACAATGTTTACTGGATTGAGAGCCGACATACCGCCAGTGGCGTATGTAAAGGCATTGGATCTTTGGATGGCGGGCTGTATGATGTTTGTCTTCGCTGCTTTAGGGGAGTTCGTGGTTGTAAAAGTGTTAGACAAACAATATCAAATGAACAAAACAAAAGCTCAAGAATCGATGCCTAGAATAATTCCTGTGCGCCTTAATGGTGAAAAGGGATCTTGTGGCACTGTCGCTGCTTGGGAGGGAAGCGGAGTTCGATGTAGGAAAGTGGACCTAACCTCTCCGACATCACCTCCCGCAACTACCCCGGCTGCACACCAAGTACCAGGAGCAACTGCTCATCTGGTGGGAGTTGAGAGGCGCCAAAGTATATTACAGGTGGCGTGGCTAGACGCGGACACCGGACAAGAAAGAGTTTTATGGCGAGAAATTGACAAGCTTTCGCGGGTTGTGTTCCCGGCATTATTTTTATTATTTGTTACAATGTACTGGCCAGTACTGTTATTGAAAACTAAGGCATCTTTGTAG

Protein sequence:

>DPOGS202675-PA
MVSRIWRATFFFLIWLCNDVTSKRNHTLKPRVVLPENYVKEMRPPSRKGDPVVVEFSIYVVDVNSINVEDMDFRVDMFIRQTWIESRLQLPEDIFEEGDDHVTLPPEFFNNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTVRYAARMHAIIACQMEFQLYPMDIQSCPIYIESFSYSNQKVRFRWSVAGVTINPELKLLQYHIGEPLRLEETNGYMIDKDGNYSRLVVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRVTLLVTCMLTLVTMFTGLRADIPPVAYVKALDLWMAGCMMFVFAALGEFVVVKVLDKQYQMNKTKAQESMPRIIPVRLNGEKGSCGTVAAWEGSGVRCRKVDLTSPTSPPATTPAAHQVPGATAHLVGVERRQSILQVAWLDADTGQERVLWREIDKLSRVVFPALFLLFVTMYWPVLLLKTKASL-