Monarch geneset OGS2.0

DPOGS203282
TranscriptDPOGS203282-TA1905 bp
ProteinDPOGS203282-PA634 aa
Genomic positionDPSCF300003 - 1697174-1703624
RNAseq coverage119x (Rank: top 58%)
Annotation
HeliconiusHMEL0025030.058.79% 
BombyxBGIBMGA012226-TA0.074.47% 
DrosophilaSdhA-PB0.058.15% 
EBI UniRef50UniRef50_Q945230.058.15%Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1313 Tax=root RepID=DHSA_DROME
NCBI RefSeqXP_001995110.10.058.96%GH22974 [Drosophila grimshawi]
NCBI nr blastpgi|1950564970.058.96%GH22974 [Drosophila grimshawi]
NCBI nr blastxgi|3287042210.059.77%PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [Acyrthosiphon pisum]
Group
Gene OntologyGO:00166273.4e-251oxidoreductase activity, acting on the CH-CH group of donors
GO:00060993.4e-251tricarboxylic acid cycle
GO:00506603.4e-251flavin adenine dinucleotide binding
GO:00551143.4e-251oxidation-reduction process
GO:00229004e-213electron transport chain
GO:00090553e-111electron carrier activity
GO:00164913e-111oxidoreductase activity
KEGG pathwaydgr:Dgri_GH229740.0 
 K00234 (SDHA, SDH1)maps-> Huntington's disease
    Citrate cycle (TCA cycle)
    Oxidative phosphorylation
    Alzheimer's disease
    Parkinson's disease
InterPro domain[32-634] IPR0112813.4e-251Succinate dehydrogenase, flavoprotein subunit
[35-600] IPR0140064e-213Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
[35-428] IPR0039533e-111Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
[474-634] IPR0159394.1e-46Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal
[483-634] IPR0041125.2e-42Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
Orthology groupMCL10317 Multiple-copy universal gene
Genotypes for resequenced monarchs and outgroup Danaus species

Nucleotide sequence:

>DPOGS203282-TA
ATGCTTTTGGCCTCTCTTAAAGGCGGACTTAAAAGAAGTCACAAAGGCCTTATCAATGTGCCCAAGCGGACCAAAGCGTATACCATAAAATACCATAAGCATGATTGCCTGGTTCTTGGGGCTGGAGGCGCTGGGCTTAGAAGCGCTATAGGACTTGGAGACGCAAAGTTTTCAGTGGCAGTGGTTAGCAAACTGTTCCCCACGCGATCACATACTATCGCTGCCCAAGGCGGCATGAACGCATCTATCGGAAGTATGCACGCGGATGACTGGCGTTGGCATTTCTATGATACCGTTAAAGGTTCGGATTGGCTTGGGGATCAGGATTCAATTCATTATCTAACTCGTAACGCACCCCACTGTGTGTTTGAGTTAGAAAACATGGGGATGCCATTCTCAAGAACGAAAGAGGGAAAGATATATCAGAGATCGTTTGGCGGTGGTACTATTGAGAGGGGGAAAAAAATTGCAAAAAGAACTTGTGCTGTTGCCGATCGAACTGGTCATGCGCTATTGCACACCTTATATGGCTATAGCACCAAGTTTAAAAACGTTGATTTCTTCACTGAATTCTTCGTACTTGATATTCTCATGCAAGACGGCGCATGCGTTGGAGCTTTGGCTTTGGACATGGATGATAGCAGTCTTCATTGTTTCCAAGCTATGAATACAGTAGTTTGCACGGGCGGATACCCTCGGATGTACTTTTCTTGTACTGCTGCCCACACCTGCACAGGGGACGGCTGTGCTATGGCTGGGAGAGCTGGCTTTCCTCTGCAAGATTTAGAGTTTATACAATTCCACCCCACCGGAATGTATGGATCTGGTTGTCTTATGACGGAGGGTTGCCGAGGTGAAGGTGGGTACATTGTTAATAGCGAAGGAGTAAGATTCATGGAAAAATATGCACCTAAAGCCAAGGATCTTGCGAGCAGAGACGTCGTTTCAAGATCAATTGCAACAGAAATAAAAGAAGGCAGAGGGGTGGGCCCGAAGAAAGATCATGTTTACCTTCAGCTTCACCATCTCCCTGCAGAGACGATAAGAGAAAAGCTGCCTGGTATTTCGGAAACCGCGTATACTTTCACCGGCGCAGATGTTTACACGCAACCCGTACCGATTGTGCCAACAGTACATTACACTATGGGAGGTATACCGATAAATTACAAGGGAGAGGCTTTAGTCTACCAAAATGGGAAGGATAACGTAATACCCGGCTTACATGCTGCTGGTGAGGCAGTTAGTAATTGCCACGGAGCCAATAGATTGGGCGCAAACTCGATTCTTGACGTCGTCGTATTTGGAAGATCTATTGGTTTAAACTTAGCAAAGATTGCTAAACCCGGAGCCAATCAACCTAAATTAAAAGACGGTATATGTGATGCGATTCTAGATAATTATGAAACTGTTAAAGGCAGTAATGGATGCGTAGCGGTACATGAACTTAGAGAATCAATGAGACACACGATGCAGAACAAGTGTGGCGTGTTCAGAGATAGTAAGCTGTTAGGCGAAGCCAATGAAGAAATACAAAAATGTTTTAAGCTCTTCAAAGAGATTAGAGTTACGGATCAAAGGCGAAACTGGAATTCAGATCTCATCGAAGCGTTGGAGTTACAAAACATGGTACAAACTGCTGTCCAAGTCGTAGCTTGCGCTCTTAATCGTAAAGAAAGTCGCGGAGCTCATTTTCGAGATGATTTTCCTAAGCGGCTCGACGAAATGGATTACAGCAAAGACACTAAAGGACAAACCCCGAAGCCAATAGATCAGCATTGGAGAAAACATAGCTTGTCTAAAGTTGATTTGGATACTGGCAAGGTCACGATCACCTACCGGCCGGTCATTGACAAGACTATGAGTGATGAAGTTGAAACAATACCGCCGGTACCGAGAGTTTATTGA

Protein sequence:

>DPOGS203282-PA
MLLASLKGGLKRSHKGLINVPKRTKAYTIKYHKHDCLVLGAGGAGLRSAIGLGDAKFSVAVVSKLFPTRSHTIAAQGGMNASIGSMHADDWRWHFYDTVKGSDWLGDQDSIHYLTRNAPHCVFELENMGMPFSRTKEGKIYQRSFGGGTIERGKKIAKRTCAVADRTGHALLHTLYGYSTKFKNVDFFTEFFVLDILMQDGACVGALALDMDDSSLHCFQAMNTVVCTGGYPRMYFSCTAAHTCTGDGCAMAGRAGFPLQDLEFIQFHPTGMYGSGCLMTEGCRGEGGYIVNSEGVRFMEKYAPKAKDLASRDVVSRSIATEIKEGRGVGPKKDHVYLQLHHLPAETIREKLPGISETAYTFTGADVYTQPVPIVPTVHYTMGGIPINYKGEALVYQNGKDNVIPGLHAAGEAVSNCHGANRLGANSILDVVVFGRSIGLNLAKIAKPGANQPKLKDGICDAILDNYETVKGSNGCVAVHELRESMRHTMQNKCGVFRDSKLLGEANEEIQKCFKLFKEIRVTDQRRNWNSDLIEALELQNMVQTAVQVVACALNRKESRGAHFRDDFPKRLDEMDYSKDTKGQTPKPIDQHWRKHSLSKVDLDTGKVTITYRPVIDKTMSDEVETIPPVPRVY-